Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc803g00003 ATGCGTTGGTCATCATTCTACCACAGAGCATCAAGGGTTTTTAATGAGTATCCCAGTTTTTCCAAGTCTGTTATTGTATGCACTGTTATCAGTAGTGGTGGAGGCCTAGGCCTAGTGGCGTATGGAGACGCGGTACAGAGTAGTAGTGATAATGCTAAAGAAAGAAAGAAGAAGGTGGTGATTCTTGGAACAGGTTGGGCTGGAACCAGTTTCATTAAGAGCATGAAAAGCACGTCTTATGACATCCACGTTGTTTCACCGCGTAACTATTTTGCATTCACCCCTCTCTTGCCCAGTGTCACCTGTGGCACTGTCGAAGCACGCAGCATTGTTGAACCCATTCGCAACATCTCAAGAAAGAGTGGTGTGAATATTGAATTCAGTGAAGCAGAATGCTATAAGATCGACCCCAAGAACAGGAAAGTTTATTGCCGTGCTGATCCAGAGAAAAAGATGGGTGGCATTGAAGACTTTTCCCTTGATTATGATTACTTGGTAATAGCTATGGGTGCAAAATCTAATACCTTCAACACACCTGGAGTTCAGGAACATGCTTTCTTCTTGAAGGAAGTGGATGATGCTCTAAGAATCCGGCAAAAGGTGGTTGATCTTTTTGAGAAAGCAAGCATTCCATCCATACCTGTTGAAGAGAAGAAGAAGCTTCTAAGTTTTGTCATTGTTGGTGGAGGTCCAACTGGTGTAGAGTTTGCTGCAGAACTTCATGACTTTGTTCATGAGGATCTTTCTAAGCTATATCCTTCTCTAAAATCTTATGTCAAGATCACTCTGCTCGAGGCGGGCGATCATATCTTAAACATGTTTGACAAGAGAATCACAGAATTTGCTGAAACAAAGTTCAAAAGGGATGGCATTGATGTGAAGTTGGGATCTATGGTGATCAAAGTAAGTGAGAGAGAAATCTCTGCCAAAGATAGAGTAACCGGTAAAGTCGGTTCCATACCTCATGGAATGGTAGTTTGGTCGACAGGTGTGGGTCCACGCCCAGAAATAGTAGAATTCATGAAACAAGTTGGCCAGAGTAATAGACGTGCACTAGCCACTGATGAATGGCTAAGGGTGGAAGGATCTGACAACATCTATGCTTTAGGTGATTGTGCCACTATAAATCAGAGGAAAGTTATGGAAGATATAGCATCGATATTCAGCAAGGCAGACAAGAACAACACAGGAAAGTTAGATGTGAAAGAATTTCATGGCGTTGTGGACGACATAATCGAGAGGTACCCTCAGGTGGAGATTTACTTAAAGAAGAACCAAATGAAAGATATAGCTACCTTGCTCAAGTTTTCTCAAGAGAGCTCAGTTACAGTTGACATTGAATCCTTCAAATCTGCACTTTCCAATGTTGATACTCAGATGAAAAATCTCCCTCCAACAGCTCAGGTAGCTGCCCAGCAAGGAGCCTATCTTGCAGATTGTTTCAACCGCATGGAGACTTGCGAGCAGTATCCGGAAGGGCCTCTTAGATTCAGGGGAACCGGACGCCATCGCTTTCATCCCTTCAGGTACAAGCATTTTGGACAATTTGCTCCTCTAGGAGGAGAACAAACTGCAGCTCAACTTCCGGGAGATTGGATTTCAATTGGGCATAGCACACAATGGTTGTGGTATTCTATATATGCAAGCAAACTAGTGAGTTGGAGAACAAGAGCATTGGTGGTGTCTGATTGGGGTAGGAGATTCGTATTTGGAAGGGACTCAAGTCGAATCTGA 1734 0.4325 MRWSSFYHRASRVFNEYPSFSKSVIVCTVISSGGGLGLVAYGDAVQSSSDNAKERKKKVVILGTGWAGTSFIKSMKSTSYDIHVVSPRNYFAFTPLLPSVTCGTVEARSIVEPIRNISRKSGVNIEFSEAECYKIDPKNRKVYCRADPEKKMGGIEDFSLDYDYLVIAMGAKSNTFNTPGVQEHAFFLKEVDDALRIRQKVVDLFEKASIPSIPVEEKKKLLSFVIVGGGPTGVEFAAELHDFVHEDLSKLYPSLKSYVKITLLEAGDHILNMFDKRITEFAETKFKRDGIDVKLGSMVIKVSEREISAKDRVTGKVGSIPHGMVVWSTGVGPRPEIVEFMKQVGQSNRRALATDEWLRVEGSDNIYALGDCATINQRKVMEDIASIFSKADKNNTGKLDVKEFHGVVDDIIERYPQVEIYLKKNQMKDIATLLKFSQESSVTVDIESFKSALSNVDTQMKNLPPTAQVAAQQGAYLADCFNRMETCEQYPEGPLRFRGTGRHRFHPFRYKHFGQFAPLGGEQTAAQLPGDWISIGHSTQWLWYSIYASKLVSWRTRALVVSDWGRRFVFGRDSSRI 577
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc803g00003 577 Gene3D - 441 576 - -
Stsc803g00003 577 Gene3D - 46 425 - -
Stsc803g00003 577 ProSiteProfiles EF-hand calcium-binding domain profile. 379 414 IPR002048 GO:0005509
Stsc803g00003 577 PANTHER NADH DEHYDROGENASE 47 577 IPR045024 GO:0003954|GO:0006116
Stsc803g00003 577 ProSitePatterns EF-hand calcium-binding domain. 392 404 IPR018247 -
Stsc803g00003 577 PRINTS FAD-dependent pyridine nucleotide reductase signature 223 241 - -
Stsc803g00003 577 PRINTS FAD-dependent pyridine nucleotide reductase signature 162 180 - -
Stsc803g00003 577 PRINTS FAD-dependent pyridine nucleotide reductase signature 59 78 - -
Stsc803g00003 577 Pfam Pyridine nucleotide-disulphide oxidoreductase 57 381 IPR023753 GO:0016491
Stsc803g00003 577 SUPERFAMILY EF-hand 337 463 IPR011992 -
Stsc803g00003 577 FunFam External alternative NAD(P)H-ubiquinone oxidoreductase B1, mitochondrial 47 408 - -
Stsc803g00003 577 SUPERFAMILY FAD/NAD(P)-binding domain 224 376 IPR036188 -
Stsc803g00003 577 SUPERFAMILY FAD/NAD(P)-binding domain 56 275 IPR036188 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc803g00003 Stsc-Chr803 20857 24257 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc803g00003 1 577 Chloroplast and Mitochondria Gene Families AT4G21490 67.863 0.0 806
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc803g00003 K03885 - gmx:100820044 961.829