Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc803g00002 ATGAAGATGGGTTCCTTCTTCATGAGGGCCTCCTCTGCTCTCAAAAAATACCCTTCATCCTCCAAGCTTCTTCTCCTCTGCACTCTCAGCTTCAGTGGTGGAGGTGTAGTGGCATACTCAGAATCAAGATCAGAAACTGAACATCCTGTTGTTGATGCTGGTGTGGTCCCAAAAAAGAAAGTAGTGGTTCTTGGAACCGGGTGGGCTGGTACCAGTTTCCTTAAGGATCTGGATGCTTCACGGTACGATGTTCAGGTTGTTTCGCCACGTAACTACTTTGCATTCACTCCCTTGTTACCCAGTGTCACTTGTGGAACAGTTGAAGCACGGAGCATTGTAGAGCCGGTTCGAACCTTAATAAAAAAGAGTAAAGGTGAAATCAAATATTGGGAGGCAGAGTGTGTCAAGATTGATGCTGCAAACAGAAAGGTCTTTTGTAATTCCAATATCGACAACTTAGTTGGAAGAGGCAAATTTTCTTTGGACTATGACTTCTTGGTTTTAGCAGTTGGATCACAAGTAAATACTTTTAACACCCCTGGAGTGAAAGAGAACTGCCATTTTCTGAAGGATATTGAGGATGCTAAGAGGATCAGACTGTCTATCACAGATTGCTTTGAGAAGGCTGTTCTTCCTAGTCTATCCGAAGAAGAGCGAAGGTCGAATCTTCATTTTGTAGTTGTTGGAGGGGGTCCAACTGGAGTGGAATTTGCTGCAGAGCTCCATGATTATGTCCAAGAAGATTTGACAAACTTATATCCTGCTGTTAAGGATTTGGTGAAGATAACATTGATTCAATCAGGAGATCACATCCTGAATACGTTTGATCAAAGAATAAGTACATTTGCTGAGCAGAAGTTTACAAGAGACGGTATAGAGGTTCAAACGGGATGCCGTGTCATCAGTGTTAGCGACAAGGAAATTACAATGAAGGTGAAATCAACAGGAGAGGTTTGCTCTGTGCCGCACGGATTGATTGTCTGGTCCACTGGCATTTCAACTATTCCAGTTATAAGGGACTTAATGGAACAAGTTGGTCAGGGTAAAAGACGTGTACTAGCAACCGATGAATGGTTGCGAGTGAAAGGAAGTGAAGATGTGTATGCAATTGGTGATTGTTGTACAATAGATCAACGAAAAATCATGGATGATATCTCAGCCATATTTGCGGCTGCGGACAAAAACAACTCCGGTACATTAACCATCGAAGAATTCCAGGATGTGATGGATGACATCTTACTAAGATATCCACAAGTTGAACTTTTCTTGAAGAAAAAGCATCTTCTTGATTTCACCTCTCTGTGGTTAGATTCACAAGGGAATGAAAGAAAAGAGATAGACATAGAAGGGTTTAAGCAGGCTCTTTCTCATGCAGATTCACAGATGAAGAGTCTTCCAGCTACTGCACAGGTTGCTGCCCAACAAGGTACCTATCTAGCTAGATGCTTTAACCGAATGGATCAATGTGAAGAGAATCCTGAAGGTCCTCGGCGATTTAGAGGAACCGGACGACACAAGTTTCTTCCCTTCCGGTATAAGCATTTCGGGCAATTCGCACCGCTGGGTGGTGAGCAAGCGGCCGCAGAACTCCCCGGAGACTGGGTTTCCATGGGTCACAGCACTCAATGGCTCTGGTATTCTGTATATGCAAGCAAGCAAGTGAGCTGGCGCACAAGGGTATTGGTGATGTCTGATTGGACTAGAAGATTCATCTTTGGAAGAGACTCAAGTCGTGTTTAA 1740 0.4362 MKMGSFFMRASSALKKYPSSSKLLLLCTLSFSGGGVVAYSESRSETEHPVVDAGVVPKKKVVVLGTGWAGTSFLKDLDASRYDVQVVSPRNYFAFTPLLPSVTCGTVEARSIVEPVRTLIKKSKGEIKYWEAECVKIDAANRKVFCNSNIDNLVGRGKFSLDYDFLVLAVGSQVNTFNTPGVKENCHFLKDIEDAKRIRLSITDCFEKAVLPSLSEEERRSNLHFVVVGGGPTGVEFAAELHDYVQEDLTNLYPAVKDLVKITLIQSGDHILNTFDQRISTFAEQKFTRDGIEVQTGCRVISVSDKEITMKVKSTGEVCSVPHGLIVWSTGISTIPVIRDLMEQVGQGKRRVLATDEWLRVKGSEDVYAIGDCCTIDQRKIMDDISAIFAAADKNNSGTLTIEEFQDVMDDILLRYPQVELFLKKKHLLDFTSLWLDSQGNERKEIDIEGFKQALSHADSQMKSLPATAQVAAQQGTYLARCFNRMDQCEENPEGPRRFRGTGRHKFLPFRYKHFGQFAPLGGEQAAAELPGDWVSMGHSTQWLWYSVYASKQVSWRTRVLVMSDWTRRFIFGRDSSRV 579
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc803g00002 579 PANTHER NADH DEHYDROGENASE 57 579 IPR045024 GO:0003954|GO:0006116
Stsc803g00002 579 ProSitePatterns EF-hand calcium-binding domain. 393 405 IPR018247 -
Stsc803g00002 579 SUPERFAMILY FAD/NAD(P)-binding domain 224 390 IPR036188 -
Stsc803g00002 579 PRINTS FAD-dependent pyridine nucleotide reductase signature 163 181 - -
Stsc803g00002 579 PRINTS FAD-dependent pyridine nucleotide reductase signature 224 242 - -
Stsc803g00002 579 PRINTS FAD-dependent pyridine nucleotide reductase signature 61 80 - -
Stsc803g00002 579 FunFam External alternative NAD(P)H-ubiquinone oxidoreductase B1, mitochondrial 51 409 - -
Stsc803g00002 579 Gene3D - 423 579 - -
Stsc803g00002 579 Gene3D - 50 422 - -
Stsc803g00002 579 SUPERFAMILY FAD/NAD(P)-binding domain 58 276 IPR036188 -
Stsc803g00002 579 FunFam External alternative NAD(P)H-ubiquinone oxidoreductase B1, mitochondrial 426 578 - -
Stsc803g00002 579 Pfam Pyridine nucleotide-disulphide oxidoreductase 59 382 IPR023753 GO:0016491
Stsc803g00002 579 SUPERFAMILY EF-hand 342 465 IPR011992 -
Stsc803g00002 579 ProSiteProfiles EF-hand calcium-binding domain profile. 380 415 IPR002048 GO:0005509
Stsc803g00002 579 SMART efh_1 384 412 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc803g00002 Stsc-Chr803 13627 17629 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc803g00002 1 579 Chloroplast and Mitochondria Gene Families AT4G21490 63.356 0.0 759
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc803g00002 K03885 - gmx:100793566 967.222