Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc8002g00001 ATGGTCCTTCTCGTGGGCGTGATCGGCTCGGTTGCGATCGGCGTAAGCAGCCACCCAACCGGCAAATCCGCCGACTGCGTTGATGACCACGTAGAAGATGCCCACGTGGCAAAATCCCAAAAGAACGTAGAAATGATTTGTGGATCCACAGAATACAAAGACACATGCAAAGACAGTCTCTCAGATGCTTCAAACAAAACCTCAGACATGAAAGAACTCATCAAAGCTGCATTCAACTACACTACAATTGAATTATCCAGCCACATTCAAAACTCATCTCTTTACAAAGAGTTAGGGAAGGACAACATGACGAGACAAGCTTTAGACATATGCAAGGAAGTTCTTGGTTATGCAGTTGATGATCTTCACAAATCTATTGAAAAGATTGACAAATTTGAGCTGAGCAAGATCAATGAATATGCATATGATATCAAGCAATGCCTTGGACATGATCAATGGTGTAAGCAAGGTCCTCGGGCAATTCGACTTTAG 492 0.4309 MVLLVGVIGSVAIGVSSHPTGKSADCVDDHVEDAHVAKSQKNVEMICGSTEYKDTCKDSLSDASNKTSDMKELIKAAFNYTTIELSSHIQNSSLYKELGKDNMTRQALDICKEVLGYAVDDLHKSIEKIDKFELSKINEYAYDIKQCLGHDQWCKQGPRAIRL 163
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc8002g00001 163 CDD PMEI-like_3 46 145 - -
Stsc8002g00001 163 Gene3D Invertase/pectin methylesterase inhibitor family protein 38 159 IPR035513 -
Stsc8002g00001 163 PANTHER PECTINESTERASE 13 148 - -
Stsc8002g00001 163 Pfam Plant invertase/pectin methylesterase inhibitor 43 142 IPR006501 GO:0004857
Stsc8002g00001 163 NCBIfam pectinesterase inhibitor domain 36 141 IPR006501 GO:0004857
Stsc8002g00001 163 SMART PMEI_2 38 150 IPR006501 GO:0004857
Stsc8002g00001 163 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 41 141 IPR035513 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc8002g00001 Stsc-Chr8002 16 697 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc8002g00001 2 157 Carbohydrate Esterase AT3G05610 34.375 1.32e-24 97.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc8002g00001 K01051 - gmx:100784682 152.14