Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc7g00054 ATGAGTCTTTGTAATTTAACTAGGTACAGAAACAAACTAGCTAGCTTGATTGTTGTTTCAGGAGAGAACACAGTTAGCCCACTTGGTCGTGTTGTGCTGATAATATGGCTTTTTGTGGTTCTAATAATCAATTCAAGTTACACGGCAAGCTTGACGTCAATTCTAACGGTGCAGCAGCTGTCCTCACCAATAACAGGCATTGACACCTTGATAACCAGCAACAAGCCCATAGGATTCCAAGTAGGGTCATTTGCTGAGAACTATCTCACTCAGGAACTCAACATCCCAAAACATAGGCTTGTTCCCCTTGGCTCTCCCCAAGAATATGCTATTGCCCTTGAGAAGGGAACTGTTGCTGCTGTGGTAGATGAGCGACCATATGTAGAACTCTTCCTGTCAGAACACTGCCAATTCTCAGTTAGGGGCCAAGAGTTCACCAAAAGTGGATGGGGATTTGCATTCCGGAGGGACTCTCCTTTAGCCATTGACATGTCAACTGCCATTCTGAGTCTGTCTGAGAACGGTGAACTTAGCAAGATCCGTGATAAGTGGCTTTCAAAAAAGTTGTGTGGTTTTCGCGGTGCAGTGGATGAGCAGCTTCAATTCAACAGCTTCCGGGGACTATTCCTGCTCTGTGGGATAGCGTGTTTGGCAGCGCTCCTTATCTACTTACCCTCGGTGGTATACCAATTCAGTCAGAACTCCCCCCAAAGAGAGAAGAAAGCCAATCATTGCACCACCTCACCTTCTGCCCGCTTCCACACATTTCTAAGCTTCGTTGACGAAAAGGAAGAAACATCACGCAACAAGTTTAAAAGAAAAGTCCAGGATTTGTCATCTTCCAGATCCAGAACCCGAATCAGCCGTTCAAGGACCATGTCCATGTCCGAGAAATTACAGGGACACACAGGCACTCCTCAAGAGTCAAGACAAGATCAAATGCCAGCCACTCAGGTTCGGCCGATAAAGCAATCAATTAGCATGAAATCATGA 993 0.4582 MSLCNLTRYRNKLASLIVVSGENTVSPLGRVVLIIWLFVVLIINSSYTASLTSILTVQQLSSPITGIDTLITSNKPIGFQVGSFAENYLTQELNIPKHRLVPLGSPQEYAIALEKGTVAAVVDERPYVELFLSEHCQFSVRGQEFTKSGWGFAFRRDSPLAIDMSTAILSLSENGELSKIRDKWLSKKLCGFRGAVDEQLQFNSFRGLFLLCGIACLAALLIYLPSVVYQFSQNSPQREKKANHCTTSPSARFHTFLSFVDEKEETSRNKFKRKVQDLSSSRSRTRISRSRTMSMSEKLQGHTGTPQESRQDQMPATQVRPIKQSISMKS 330
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc7g00054 330 Pfam Bacterial extracellular solute-binding proteins, family 3 47 186 IPR001638 -
Stsc7g00054 330 Gene3D - 12 93 - -
Stsc7g00054 330 MobiDBLite consensus disorder prediction 281 330 - -
Stsc7g00054 330 SMART GluR_14 15 187 IPR001320 GO:0015276|GO:0016020
Stsc7g00054 330 Pfam Ligand-gated ion channel 21 216 IPR001320 GO:0015276|GO:0016020
Stsc7g00054 330 SUPERFAMILY Periplasmic binding protein-like II 46 190 - -
Stsc7g00054 330 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 23 254 IPR015683 -
Stsc7g00054 330 Gene3D - 152 184 - -
Stsc7g00054 330 MobiDBLite consensus disorder prediction 270 330 - -
Stsc7g00054 330 Gene3D - 120 151 - -
Stsc7g00054 330 FunFam Glutamate receptor 86 189 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc7g00054 Stsc-Chr7 286416 287508 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc7g00054 22 290 Ion Channels AT2G17260 60.364 9.57e-108 333
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc7g00054 K05387 - jre:108997407 349.747