Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc7g00053 ATGAATAATCATCTGTCACAATGCCATGCATTAACAACATTAATACTGCTTCTATTATTGCATGCATATGGACAAGGAGCATCCAGCAATGAGATTGAAGTCGTCAAAATCGGTGCCATCTTCACATTGAAAACTATAAACGGACGAGTTTCCAAAATTGCGATCCAAGCTGCTGAGAGGGACGTCAATGCAGATCCTCGCATCCTGGGTGGACGTAAATTGTCTATCACCGTCCATGACTCCAACTTCAGTGGCTTTGTTAGCTTCATTGGGGCCCTCAAGTTTTTGGTGACGGACACTGTAGCAATAATTGGTCCACAAAATTCAGTGATGGCCCATGTGCTTTCACATCTTGCAAATGAGCTCCACGTTCCTCTACTCTCCTTCACGGCTCTGGATCCCACCCTATCGCCTCTTCAGTACCCTTATTTCGTTCAAACAGCACCCAGCGATCAGTTCCAGATGAGTGCAGTGGCAGACATCATTAGCTATTATGGTTGGAGAGAGGTCATTGCGGTGTTCAGCGACGATGATCAGAGCCGGAACGGCATAACTGTCTTGGGGGATAAGCTTGCAGAGAGACGCTGTAAGTTGTCTTACAAAGCAGCACTGCCCCCTGATCCAAGGGCCAGCGCAAGCGATGTTTCCTCTGAGCTGGCCAAGGTTCAAAGCATGGAAGGCCGAGTGGTTGTGGTGCACACCTTTGCCCAAACAGGTCTATTGGTTTTTGATGTGGCTCACAGACTAGGGATGATGAGCCAAGGGTATGTGTGGATAGCTTCTACTTGGCTTTCAACTGTTTTAGATTCAGCTTCAAACACCTCCAACTCTCTGAATATCCGGGGAGTTGTCACTCTTCGTCCTCACACCCCTCAGTCAAGACTAAAACAGGAATTCATCTCAAGGTGGAAGCACATAAGTAATGGCTCTGTTGGGTTAAATCCATACGGGCTCTACGCTTATGATGCTGTTTGGACCATCGCCCATGCATTGAAGCTATTCTTTGCGGAGAATGGGACCATCTCTTTCTCCAATAATACAAATAATTTAGGTGGTATGGTTGGTCTTGCTTCCTTGAGCATCTTTGATGGGGGGAAGCAGTTACTGGATAACATACTCGGCATTAATACTACTGGATTGACGGGACCCATTCAATTTGTTGGCTCAAGCAGATCCTCCTTGCATCCATCCTATGACATCCTTAATGTACATGCCACCACTGGCTATAGGACTATTGGTTACTGGTCCAATTACTCTGGCCTCTCTGTCGTAACTCCCGAGAAACTTTACAGAAAGACGGCGAACCGCTCTGTTTTAAACCAGCATCTATACAATGTGACATGGCCTGGCAATACAAGGGAAAGGCCTCGTGGATGGGTTTTCCCCAATAGTGGGAGGCAACTTAGAATCGGGGTCCCCAACAGAGCCAGTTACCGAGGCATAGTCTCACAAATAAATGGCACCCATGTAGTTCAAGGTTACTGCATAGACATATTCCTCGCTGCCATCAAATTGCTTCCATATCCAATTCAGTATAGGTTTATTCTGTTTGGAGATGGACATAAGAATCCAAGCTACTATGATCTTGTCAACATGATTGCTTCGGATGTGTTTGATGCTGCTATAGGTGACATTGCAATTGTCACTGACCGAACAAAGATCGTGGATTTTACTCAACCATATATAGAGTCAGGACTAGTTGTGGTTGCACCCGTTCAAAGATTGAAGTCAAGTGCTTGGGCTTTCTTGAGACCATTTACTGCACCCATGTGGGCTGTGACTGCACTTTTTTTCCTTCTTGTTGGAGCAGTGATCTGGGTTCTTGAACATCGTACCAATGATGAGTTTCGAGGGTCTCCAAAGACGCAAATAGTCACGGTTCTTTGGCAAGCACCTCTGGCTTTCAAATTATTAAATTGA 1920 0.4573 MNNHLSQCHALTTLILLLLLHAYGQGASSNEIEVVKIGAIFTLKTINGRVSKIAIQAAERDVNADPRILGGRKLSITVHDSNFSGFVSFIGALKFLVTDTVAIIGPQNSVMAHVLSHLANELHVPLLSFTALDPTLSPLQYPYFVQTAPSDQFQMSAVADIISYYGWREVIAVFSDDDQSRNGITVLGDKLAERRCKLSYKAALPPDPRASASDVSSELAKVQSMEGRVVVVHTFAQTGLLVFDVAHRLGMMSQGYVWIASTWLSTVLDSASNTSNSLNIRGVVTLRPHTPQSRLKQEFISRWKHISNGSVGLNPYGLYAYDAVWTIAHALKLFFAENGTISFSNNTNNLGGMVGLASLSIFDGGKQLLDNILGINTTGLTGPIQFVGSSRSSLHPSYDILNVHATTGYRTIGYWSNYSGLSVVTPEKLYRKTANRSVLNQHLYNVTWPGNTRERPRGWVFPNSGRQLRIGVPNRASYRGIVSQINGTHVVQGYCIDIFLAAIKLLPYPIQYRFILFGDGHKNPSYYDLVNMIASDVFDAAIGDIAIVTDRTKIVDFTQPYIESGLVVVAPVQRLKSSAWAFLRPFTAPMWAVTALFFLLVGAVIWVLEHRTNDEFRGSPKTQIVTVLWQAPLAFKLLN 639
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc7g00053 639 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 35 630 IPR015683 -
Stsc7g00053 639 SUPERFAMILY Periplasmic binding protein-like I 34 460 IPR028082 -
Stsc7g00053 639 CDD PBP1_GABAb_receptor_plant 36 424 IPR044440 -
Stsc7g00053 639 Pfam Ligated ion channel L-glutamate- and glycine-binding site 484 570 IPR019594 GO:0004970|GO:0016020
Stsc7g00053 639 Gene3D - 53 395 - -
Stsc7g00053 639 Gene3D - 580 631 - -
Stsc7g00053 639 Gene3D - 463 579 - -
Stsc7g00053 639 SMART GluR_14 469 632 IPR001320 GO:0015276|GO:0016020
Stsc7g00053 639 Gene3D - 150 421 - -
Stsc7g00053 639 FunFam Glutamate receptor 463 579 - -
Stsc7g00053 639 SUPERFAMILY Periplasmic binding protein-like II 446 593 - -
Stsc7g00053 639 Pfam Receptor family ligand binding region 53 404 IPR001828 -
Stsc7g00053 639 FunFam Glutamate receptor 150 308 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc7g00053 Stsc-Chr7 284166 286303 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc7g00053 14 629 Ion Channels AT4G35290 59.777 0.0 774
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc7g00053 K05387 - gmx:100793969 984.171