Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc7g00047 ATGGAAGAGCCCAAAGAGGAGTTCAAAGTCACCACCAACTGGGACACCGCCAATGACCAAGCCCAGCACCAGCTCTTCTCCTCCTCAGATTTCGCCCAAATCGACGTGCTTGAGCACACCAGGTCCAGGGCCAACACTAGTACTGCCGTGGACGGCGGAGAGGAGTGTTACCCCTTGGGTGGGCGGCGCTCCTCTTCTTCGGGTTCTGGCGGGCGGAAGTCAGGCGACAAGAGGCGAACGAAGGCTGAGAAGACTATCAGCCTGCCTGTCCTCAGACAGTACTTTGCCGGAAGCCTCAAGGACGCGGCCAAGAGCATTGGAGTGTGTCCGACGACTCTGAAAAGGATATGCAGGCAGCATGGGATAACAAGGTGGCCTTCCAGGAAAATAAAGAAAGTGGGACACTCTTTGAAGAAACTTCAGCTTGTGATCGATTCGGTTCAGGGTGCAGAGGGTGCCATACAGATTGGCTCCTTCTATGCCAGCTTTCCCGAGTTGAGCTCCACTGATCTCTCTTCCCGTTCCGAATCATCACCATCCAAGAAAACCCACACTACTACAGCTACTAGCTATCACAATCACAACCACAATACCTTGTTGAAATCTCCACCCTCTTCTGCATGCAGCCAGACCTTAGAGAACTCCGACGCAGCATTGTTGCTCAAAAGAGCTCACAGCGAGGCGGCAGAGTTGCATGCATCCCTCCAATCCCAAGACGATACAAAGCATATTAATAACTTCATCAGCAGCAGATCCAATAATAAGAGCCATAATCACTCTCAAGACAGAGACAGAGAGAGGGGTGCTTTCAGAGTCAAAGCTACTTTTGGGGACGAGAAGATCCGTTTCAGCTTGCAGCCCAATTGGGGGTTCAGTGATCTACAGCTTGAGATGGCAAGGCGTTTCAACCTGAACGATGTTACCATGATGAGCAGCAGCAACATCGATCTCAAGTACTTGGATGAAGATGGGGAATGGGTTCTGTTGGCATGCGATGCAGATCTGGAGGAGTGCAAGGACATACACAGATCATCTCAGAACCGCACCATCCGACTCTCACTATTTCAAGCTTCCCCTCTCAATCATCTACCACCAAACACTTTTGCCAATGGCACCCCCAGCCCATCCTAG 1131 0.5137 MEEPKEEFKVTTNWDTANDQAQHQLFSSSDFAQIDVLEHTRSRANTSTAVDGGEECYPLGGRRSSSSGSGGRKSGDKRRTKAEKTISLPVLRQYFAGSLKDAAKSIGVCPTTLKRICRQHGITRWPSRKIKKVGHSLKKLQLVIDSVQGAEGAIQIGSFYASFPELSSTDLSSRSESSPSKKTHTTTATSYHNHNHNTLLKSPPSSACSQTLENSDAALLLKRAHSEAAELHASLQSQDDTKHINNFISSRSNNKSHNHSQDRDRERGAFRVKATFGDEKIRFSLQPNWGFSDLQLEMARRFNLNDVTMMSSSNIDLKYLDEDGEWVLLACDADLEECKDIHRSSQNRTIRLSLFQASPLNHLPPNTFANGTPSPS 376
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc7g00047 376 ProSiteProfiles PB1 domain profile. 269 357 IPR000270 GO:0005515
Stsc7g00047 376 Pfam PB1 domain 270 356 IPR000270 GO:0005515
Stsc7g00047 376 ProSiteProfiles RWP-RK domain profile. 72 153 IPR003035 -
Stsc7g00047 376 Pfam RWP-RK domain 86 133 IPR003035 -
Stsc7g00047 376 SUPERFAMILY CAD & PB1 domains 258 359 - -
Stsc7g00047 376 PANTHER PROTEIN NLP8 20 357 IPR045012 GO:0003700
Stsc7g00047 376 CDD PB1_NLP 270 356 IPR034891 -
Stsc7g00047 376 MobiDBLite consensus disorder prediction 170 210 - -
Stsc7g00047 376 Gene3D - 267 355 - -
Stsc7g00047 376 MobiDBLite consensus disorder prediction 42 83 - -
Stsc7g00047 376 MobiDBLite consensus disorder prediction 247 267 - -
Stsc7g00047 376 SMART PB1_new 269 357 IPR000270 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc7g00047 Stsc-Chr7 206770 207992 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc7g00047 2 358 NLP Transcription Factor Family AT4G35270 46.154 4.60e-96 305
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF RWP-RK Stsc7g00047 PB1 7.9e-18 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc7g00047 - - aip:107633985 611.298