Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc7g00046 ATGAACAACGTCGTCGACAACTCCTCTGGTTCTCTCAACACAGATCATGCGTGCGTGGTTACGGTTGATGTTGCGGCTTCGTCGTCCTCTCTTATCGGGAGGCGCAACCCTAGAAAGAAGATGACAAAATTGATGAGGATAATGGAGGAAGAAGGGGTGAAGAAGGTAAAGGGGAATAAGGGGAAGGCGAAGGGTGGTTACAAGAAGGCAGACACGGAGGCCCCAAAGATCACCCGTCCGTGCACGGAGTGCGGCAAGAGGTTCTGGTCGTGGAAGGCTCTCTTCGGTCACATGCGGTGCCACCCAGAGCGGCAGTGGCGAGGGATCAATCCTCCCAGCACCCTCATGATGAGACCACCACAAGAAGACAGCCTGGAAGAGCACGAGGTTGCGGCGTGTCTGCTGTTGCTTGCGAGTGGGAAGGGGAAGGGGAAAGGGAAAGAGAAGGATGATTACGAGTGTGGCGATGGCGATGATTCTGAGCAGTCATCAGTTGGAGGAGGCCATAAGTGTAGCATATGCCTCAAGGCGTTCTCCACTGGCCAGGCTCTTGGCGGCCACAAGAGGTGTCACTGGGACAACACTACTACTACTACTGCACCCTCCCCGGCCCCCATCATTGACCTCAATTTGCCTCCTCCTCCTCCTCCTCACCATTCCTCTTCTTCTTCTTCAACAACCCTCACTTTGGATTTGAGGTTGGGTCTTTAA 711 0.5429 MNNVVDNSSGSLNTDHACVVTVDVAASSSSLIGRRNPRKKMTKLMRIMEEEGVKKVKGNKGKAKGGYKKADTEAPKITRPCTECGKRFWSWKALFGHMRCHPERQWRGINPPSTLMMRPPQEDSLEEHEVAACLLLLASGKGKGKGKEKDDYECGDGDDSEQSSVGGGHKCSICLKAFSTGQALGGHKRCHWDNTTTTTAPSPAPIIDLNLPPPPPPHHSSSSSSTTLTLDLRLGL 236
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc7g00046 236 PANTHER ZINC FINGER PROTEIN ZAT2-RELATED 26 236 - -
Stsc7g00046 236 SMART c2h2final6 79 101 IPR013087 -
Stsc7g00046 236 SMART c2h2final6 169 191 IPR013087 -
Stsc7g00046 236 MobiDBLite consensus disorder prediction 206 220 - -
Stsc7g00046 236 Gene3D Classic Zinc Finger 80 191 - -
Stsc7g00046 236 MobiDBLite consensus disorder prediction 141 167 - -
Stsc7g00046 236 Pfam C2H2-type zinc finger 169 193 - -
Stsc7g00046 236 Pfam C2H2-type zinc finger 80 103 - -
Stsc7g00046 236 ProSiteProfiles Zinc finger C2H2 type domain profile. 79 106 IPR013087 -
Stsc7g00046 236 ProSiteProfiles Zinc finger C2H2 type domain profile. 169 196 IPR013087 -
Stsc7g00046 236 MobiDBLite consensus disorder prediction 221 236 - -
Stsc7g00046 236 MobiDBLite consensus disorder prediction 195 236 - -
Stsc7g00046 236 ProSitePatterns Zinc finger C2H2 type domain signature. 81 101 IPR013087 -
Stsc7g00046 236 SUPERFAMILY beta-beta-alpha zinc fingers 80 191 IPR036236 -
Stsc7g00046 236 ProSitePatterns Zinc finger C2H2 type domain signature. 171 191 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc7g00046 Stsc-Chr7 192024 192734 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc7g00046 68 236 C2H2 Transcription Factor Family AT4G35280 40.265 1.72e-45 151
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Stsc7g00046 zf-C2H2_6 8.7e-12 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc7g00046 - - adu:107496069 203.371