Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc7g00036 ATGGGCCATGTCATCCTAAGCCTACGACTTGGACTCTTCAATTCAACCATTATCATAATTAATGCCCCTTTGAGTTCCATTCCAAATCAACTTCTACAACAAGAAACTCCCAAGTATCTTCCTCCTTCACACTTCACATACACAATCACACTCATTGAAGAAGAAGCAAAGAAAAGTGTGGAGAGCTGGGAGAAGTGGAAGGATCATAAAGCTGGGAAGTCGCAAGTTGGAGGTGGCGGAGTTGCAGCAGGTTCCCAAAGTGAGCTTGAAACTGATGCTGCTGAATCCTTCTCAGATCCTCCTCTTGATCGACTCCAGACATGTGGTGACAATGCAAAGGAAAAAGGTGAGAAGGCCTCCTTGATTCCCCAGCCAAGACGGCCTGCCCTCTCCTCTCTGCAAATACCGCCATGGTCACTGGATGCCGCATTATCTTCTTTTGCAAACACGGATGCTCCTTCCCTCTCCCTCTCCAGAGGACTTCCACCAAGGCCAAATTCGGCCAGAGTAAGGCCTTCCATCACAAGTATAATTTCTCAAGGCACCTTCAGGGCCAGAACTATTCCCCACCACGCTGAAACCACACTTCTCATTCTTCCTGATACTACTCTCTCAAATGCACCTTTTGATAAGCCTTCTACTTCCAGGACCCTCTCTCTTAATGCTAAGCCTTCATTCTCTCCATTCGCAAAGGTTGCCCACTCATTACCAGTTACTCCAATTGCATCTTTCGCTTCACAAAATACAATGGATGTCAAGCAGCATATAACTCGATCACTTTCGGTTCCTGTTGATGCCAAAGCCACCAAATTAAGGCGCATTGAATCTAGGGTCTTGATTCGAGTAATTTCCGCTAGGCGGCATCTTGCAACTGTTGATGGAACTTCAACTGGTGATGCCCCAGTCATGGAGATTGCCATTGAGGATGCTACGGCAGATATTCCAGAGGAAGAAGCAGTTTGTAGGATTTGTTTGGCAGAGCTTGGGGAAGGAGGAAATATGCTTAAGATGGAATGCAGTTGTAAAGGTGATCTTGCACTTGCTCATCAAGACTGTGCAGTAAAATGGTTTAGTATTAAGGGAAACAGGACCTGCGATGTCTGCAACCAGGATGTTCAAAACCTGCCGGTAACGCTGTTGAAAATTTATAATCCTCAACCCCCTGCCAGACAGCCCCAAAATGTGCCACAACCAAGGGAAATAGCTTATTACAGGATCTGGCATGATATACCTGTACTCATCTTGGTTAGCATGCTTGCGTACTTCTGCTTTTTGGAGCAATTACTGGTTTCAGATTTGGGTCCTCGGGCTCTCGCCATTGCATTACCTTTCTCCTGTGTTTTGGGTCTCCTTTCATCCATGATTGCGTCAACCATGGGTAAATTTTTTCCTTCATTGTCTATTCCCCTATCTTGGTCCGTTCTCGTGCTCAATGAAACTGTTCATGGAGGCGCGAGTCCAAGTGATTTGGAGCAGATATCTTCTTTAGCTCATGTTGAGCAGAAGTTATATATGGGCTTATGCTTGCTTCCAGTTCGCAATTCTCATCTTCTCAATGTCAATCCAATTCTGTCGATTCTCCTTTCCTCATTCACTGGTTTCGGGATCACAATCAGCATGAACTGTCTCCTATTGGAATATGTTAGATGGAGAGCAACTAGGCAGAATCAAACGCCCAATGAGAATGTTAACAGTGTAGAGCAGCATCATCAAGAACAAAGACAGCAGCAAGAGCAACATCGATGA 1746 0.4536 MGHVILSLRLGLFNSTIIIINAPLSSIPNQLLQQETPKYLPPSHFTYTITLIEEEAKKSVESWEKWKDHKAGKSQVGGGGVAAGSQSELETDAAESFSDPPLDRLQTCGDNAKEKGEKASLIPQPRRPALSSLQIPPWSLDAALSSFANTDAPSLSLSRGLPPRPNSARVRPSITSIISQGTFRARTIPHHAETTLLILPDTTLSNAPFDKPSTSRTLSLNAKPSFSPFAKVAHSLPVTPIASFASQNTMDVKQHITRSLSVPVDAKATKLRRIESRVLIRVISARRHLATVDGTSTGDAPVMEIAIEDATADIPEEEAVCRICLAELGEGGNMLKMECSCKGDLALAHQDCAVKWFSIKGNRTCDVCNQDVQNLPVTLLKIYNPQPPARQPQNVPQPREIAYYRIWHDIPVLILVSMLAYFCFLEQLLVSDLGPRALAIALPFSCVLGLLSSMIASTMGKFFPSLSIPLSWSVLVLNETVHGGASPSDLEQISSLAHVEQKLYMGLCLLPVRNSHLLNVNPILSILLSSFTGFGITISMNCLLLEYVRWRATRQNQTPNENVNSVEQHHQEQRQQQEQHR 581
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc7g00036 581 CDD RING_CH-C4HC3_MARCH 321 369 - -
Stsc7g00036 581 SUPERFAMILY RING/U-box 317 372 - -
Stsc7g00036 581 MobiDBLite consensus disorder prediction 68 128 - -
Stsc7g00036 581 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 307 376 IPR013083 -
Stsc7g00036 581 SMART ringv_2 320 369 IPR011016 GO:0008270
Stsc7g00036 581 Coils Coil 563 581 - -
Stsc7g00036 581 PANTHER OS02G0165000 PROTEIN 517 569 - -
Stsc7g00036 581 ProSiteProfiles Zinc finger RING-CH-type profile. 313 375 IPR011016 GO:0008270
Stsc7g00036 581 MobiDBLite consensus disorder prediction 567 581 - -
Stsc7g00036 581 Pfam RING-variant domain 321 368 IPR011016 GO:0008270
Stsc7g00036 581 MobiDBLite consensus disorder prediction 558 581 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc7g00036 Stsc-Chr7 148187 153535 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc7g00036 304 375 C3H Transcription Factor Family AT2G37950 47.945 1.20e-13 68.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc7g00036 - - ahf:112765571 704.901