Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc7g00031 ATGGAGAACGAGATGGAGATGCAACAGCTGCTTAGCATGGGCTTCCCCGACGAGCTAGCAGCTCAAGCCTTGGCAGCCACTGGGGGAAAGTCCACCGTCAAAGCAACCGAATGGATCCTCACTCACAAATCAAACACTTCACCTTCCCCACCGCCTGCGCCGACGCAACCCAAGATAGAACGGTTTTTCCTCTCGCAATCCAAGCAGCAAGGGCAAGCTATAGATGAGAATGAGCAACAACAAGAGGCATCCCCACTCCCACCCTCAAAACGCCCCAGATCAAATCCAAATCCTCAATCTTCCTTCTTCTTCACCCCTCTTCGCCCTTCCAACAAGCACAACCACCAACCCTTATACGAGCGCCTCCGCCCCACAACCCTCGACCACATCCTTGGCCAGGACCATCTCCTCTCCCCCAATTCCCTCCTTCGCTCCGCCATCCACCGCAACCGTCTCCCTTCCGTCCTCCTCTGGGGTCCCCCTGGCACCGGCAAGACCACCATCGCCAGAGCCATCGTCAACTCCTTCCCTCACCAGCAATGCCCTTGCTATCGCTTTGTCTCCTTATCCGCTGTCACCAGCGGCGTCAAAGATGTCAGGGACGCCGTGGATGAGGCCAGAAAGCTCAGGTTGAAGAGCAACCACAGAACCGTTCTGTTCGTGGATGAGGTTCACCGATTCAACAAGTCCCAGCAGGACTCTTTCTTGCCCGTCATTGAAGATGGCAGCATTGTCTTCGTTGGGGCCACCACAGAGAACCCTTCATTCCACCTCATCACACCTCTTCTGTCGCGCTGCCGCGTCCTTACCCTTAACCCTCTCAAGCCCCACCATGTTGCCTTGCTTCTCAGAAGGGCTGTCGATGACTCTGACAAAGGCTTGACTCACAGCGCTGGTTGTCAAGTTGATGTCAGCCAGGATGTTTTGGATTTCATAGCAAACAACTGTGACGGGGATGCTCGTGTCGCCTTGAATGCTCTCGAGATAGCTGCTGTTACTGCTGCTGCAAGGCTCCAACAACCTGCTAACCACTCCAAAGAGGAGCAACACAAGGCGGCTGCTGCTGCTGCTGTTACACTTGATGACGCAAAGGAAGCACTTCAGTGCAAGCATCTTGCTTATGATAAAGCTGGGGAAGAGCACTATAATCTGATCAGCGCGCTCCACAAATCCATGAGGGGAAGTGATGCCAATGCAGGGATTTATTGGCTGGCAAGAATGTTGGAAGGAGGGGAAGAGCCTCTCTACATTGCGCGCAGGCTCATAAGGTTTGCGAGCGAGGATGTTGGTTTGGCTGATCCCTCGGCTCTCAATCAGGCTGTTTCATGCTATCAGGCCTGCCACTTCCTGGGAATGCCAGAGTGCAATGTCATCCTTGCACAGTGTGTTGCTTACTTGGCCTTAGCTCCTAAATCTGTCTCTGTTTACAAAGCCATAGGAGCTGCTCAAAAGGTGGTTAGGGAATCTGTTGGGCAGAATGAAGGGGTGCCTCTTCATCTAAGAAATGCACCAACCAAACTAATGAAGGACATTGGGTATGGCAAGGGATACATATATCCTCCGGATAACCCTTCATCAACACAGACCTATTTGCCACCCTCACTCGCAGGCTACAAGTTCCTTGATTGGTCTACCACCAACAAGAATGCTTCTGATGATGAAGCAAAGCCCTCTACTTCTGGGACTGCCAGTATATAG 1698 0.5265 MENEMEMQQLLSMGFPDELAAQALAATGGKSTVKATEWILTHKSNTSPSPPPAPTQPKIERFFLSQSKQQGQAIDENEQQQEASPLPPSKRPRSNPNPQSSFFFTPLRPSNKHNHQPLYERLRPTTLDHILGQDHLLSPNSLLRSAIHRNRLPSVLLWGPPGTGKTTIARAIVNSFPHQQCPCYRFVSLSAVTSGVKDVRDAVDEARKLRLKSNHRTVLFVDEVHRFNKSQQDSFLPVIEDGSIVFVGATTENPSFHLITPLLSRCRVLTLNPLKPHHVALLLRRAVDDSDKGLTHSAGCQVDVSQDVLDFIANNCDGDARVALNALEIAAVTAAARLQQPANHSKEEQHKAAAAAAVTLDDAKEALQCKHLAYDKAGEEHYNLISALHKSMRGSDANAGIYWLARMLEGGEEPLYIARRLIRFASEDVGLADPSALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSVSVYKAIGAAQKVVRESVGQNEGVPLHLRNAPTKLMKDIGYGKGYIYPPDNPSSTQTYLPPSLAGYKFLDWSTTNKNASDDEAKPSTSGTASI 565
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc7g00031 565 CDD HLD_clamp_RarA 274 368 - -
Stsc7g00031 565 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 111 340 IPR027417 -
Stsc7g00031 565 Pfam MgsA AAA+ ATPase C terminal 394 546 IPR021886 -
Stsc7g00031 565 CDD AAA 132 267 - -
Stsc7g00031 565 Gene3D - 472 557 - -
Stsc7g00031 565 MobiDBLite consensus disorder prediction 37 115 - -
Stsc7g00031 565 Gene3D - 274 348 - -
Stsc7g00031 565 MobiDBLite consensus disorder prediction 60 88 - -
Stsc7g00031 565 Gene3D - 108 272 IPR027417 -
Stsc7g00031 565 PANTHER WERNER HELICASE-INTERACTING PROTEIN 1 FAMILY MEMBER 5 553 - -
Stsc7g00031 565 MobiDBLite consensus disorder prediction 95 112 - -
Stsc7g00031 565 Pfam AAA C-terminal domain 301 393 IPR032423 -
Stsc7g00031 565 Pfam ATPase family associated with various cellular activities (AAA) 155 268 IPR003959 GO:0005524|GO:0016887
Stsc7g00031 565 FunFam AAA-type ATPase family protein 274 350 - -
Stsc7g00031 565 SUPERFAMILY UBA-like 6 52 IPR009060 GO:0005515
Stsc7g00031 565 SUPERFAMILY post-AAA+ oligomerization domain-like 378 546 IPR008921 GO:0003677|GO:0006260
Stsc7g00031 565 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 1 42 IPR015940 -
Stsc7g00031 565 Gene3D - 2 56 - -
Stsc7g00031 565 SMART uba_6 3 41 IPR015940 -
Stsc7g00031 565 SMART AAA_5 151 274 IPR003593 GO:0016887
Stsc7g00031 565 FunFam Putative AAA family ATPase 368 471 - -
Stsc7g00031 565 Pfam UBA/TS-N domain 4 39 IPR015940 -
Stsc7g00031 565 FunFam Replication-associated recombination protein A 110 273 - -
Stsc7g00031 565 Gene3D - 368 471 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc7g00031 Stsc-Chr7 133029 134726 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc7g00031 117 394 Core DNA Replication Machinery Family AT1G77470 23.944 2.83e-10 60.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc7g00031 K07478 - gmx:100799257 806.979