Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc7g00026 ATGGCAGCCATTCATCTTCATCCACATAATGCCAAGCAAAGTGACCCTCTTAGCTGGAGCCTAGCAGCGGATTCACTCACCGGCAGCCACTTTCATGAGGTCAAACAAATGGTGGCAGACTACAGGAAGGCCGCCATATGCATGGGAGCAGGGGAGCCGCTAACCATATCGCAGGTGGCTGCGGTTGCCAAGCGTGAGTCTCAAGTGAAGGTGGAGATCTCTGAGTCTGCGAGAGCAGGCGTGGAGGCCAGCTGCCAGTGGATTATGGATAGCATTGAAAAAGGCATTACCATTTATGGTGTTACCACCGGCTTTGGTGCTTCCTCCAACAGGAAAACCAATCAAGGACTTGCCCTTCAGAAAGAGATGGTTAGGTTTTTGAACTGTGCAATATTTGGCCATGAAAGTGAGTTATTCCATACGCTGCCAAAATCAGCAACCAGAGCAGCCATGCTTGTGAGGGTCAACACACTTCTTCAGGGCTATTCTGGCATCAGATTTGAAATCTTGGAAGCAATCACCAAACTCCTCAACAACAATGTCACCCCCATATTGCCATTACGTGGCACCATTACTGCCTCCGGGGATCTCATTCCTCTCTCCTACATTGCTGCATTGCTAACTGGCCGGCGAAACTCTAAAGCCGTCGGACCCCATGGAGAGTCCCTTGATGCAAAGGAGGCTTTCCATTTAGCAGGTCTTCATTCTGGGTTCTTTGAGCTGAAACCAAAAGAAGGACTTGCCCTCGTTAATGGCACTGCCGTGGGGTCTGCTGTAGCTTCTGTGGTGCTCTTCGAGGCAAACATCTTAGCCTTGTTGTCTGAAATTCTGTCAGCAGTTTTCACCCAAGTTATGCAAGGGAGTCCAGAATTCACACATCATTTGATACATAAACTCAAGTACCATCCTGGCCAAATCGAAGCTGCTGCTATCATGGAGCACATCTTAGAGGGCAACTCTTACATCAAACAAGGCAGAACACAAGAGCCAGATCCATTGCAAAAGCCTAAAAAGGATCGTTATGCTCTCCAAACTTCTCCTCAGTGGCTTGGTCCACAGATTGAAGTCATCAGGTATTCGACTAAATCAATTGAGAGGGAAATCAACTCTGTCAATGACAATCCTTTGATTGATGTCACTAGCAACAAGGCTTTGAATGGTGGCAATTTTCAAGGCACCCCAATTGGAGTTTCCATGGACAATGCACGCTTAGCTGTTGCTTCAATTGGCAAACTCATTTTTGCCCAATTTACTGAGCTAGTCAATGACTTGTATAACAACGGTTTGCCATCCAATCTCTCTGTTGGCAGAAATCCGAGTCTGGATTATGGTTTTAAGGCATCTGAAGTTGCCATGGCTGCTTATTGCTCTGAACTTCAATATCTGGCAAATCCAGTAACCAACCACGTGCAAAGTGCTGAGCAGCATAACCAAGATGTGAATTCCTTGGGGTTAATTTCTGCTTGGAAAACCGTTGAAGCTGTCGAGGTATTGAAGCTCATGTGTTCCACGTATTTGGTTGCACTTTGCCAAGCTATTGACTTGAGACATTTGGAGGAAATTTTCAAGAGCACAGTTAAGGATACTATAAGCAGAGTTGCAAAGAAGACGTTGAGCACGGATTTGTTTGGATCATGTGAGAGAGATTTGCTAAAAGTAGTTGACAGAGAATATGTATTCTCATATATTGATGATCCCTTCAATGTTAGGTACCCATTGATGCCGAAATTGAAACAAATACTTTATGAGGAAGCACACGCCAGGGCCATCAGTGAGAAGAAGAATACAAGCGTGTCAATTTTCGAGGAAATTGGAGCTTTTGAGGATGAGTTGAAGAGTGTGTTACCAAACGAGGTTGAAAGTGTAAGGGTGGCTTATGAGAATGGGAATCCAACAGTTCCAAATAGAATTGAGGAAAGCAGATCATACCCATTGTATAAGTTTGTGAGGGAGGAGCTCAGAGTTGGGTTGCTCACCGGTGAGAAGACTGCCTCGCCAGACGAGGAATTCGAGAAAGTATTTACAGCAATTTGTCAAGGAAAGATTTTTGACTCCATTCTAGACTGCCTCAAACAATGGAACGGGGTTCCTATCTCAGTTTAA 2103 0.4522 MAAIHLHPHNAKQSDPLSWSLAADSLTGSHFHEVKQMVADYRKAAICMGAGEPLTISQVAAVAKRESQVKVEISESARAGVEASCQWIMDSIEKGITIYGVTTGFGASSNRKTNQGLALQKEMVRFLNCAIFGHESELFHTLPKSATRAAMLVRVNTLLQGYSGIRFEILEAITKLLNNNVTPILPLRGTITASGDLIPLSYIAALLTGRRNSKAVGPHGESLDAKEAFHLAGLHSGFFELKPKEGLALVNGTAVGSAVASVVLFEANILALLSEILSAVFTQVMQGSPEFTHHLIHKLKYHPGQIEAAAIMEHILEGNSYIKQGRTQEPDPLQKPKKDRYALQTSPQWLGPQIEVIRYSTKSIEREINSVNDNPLIDVTSNKALNGGNFQGTPIGVSMDNARLAVASIGKLIFAQFTELVNDLYNNGLPSNLSVGRNPSLDYGFKASEVAMAAYCSELQYLANPVTNHVQSAEQHNQDVNSLGLISAWKTVEAVEVLKLMCSTYLVALCQAIDLRHLEEIFKSTVKDTISRVAKKTLSTDLFGSCERDLLKVVDREYVFSYIDDPFNVRYPLMPKLKQILYEEAHARAISEKKNTSVSIFEEIGAFEDELKSVLPNEVESVRVAYENGNPTVPNRIEESRSYPLYKFVREELRVGLLTGEKTASPDEEFEKVFTAICQGKIFDSILDCLKQWNGVPISV 700
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc7g00026 700 NCBIfam phenylalanine ammonia-lyase 15 691 IPR005922 GO:0005737|GO:0006559|GO:0016841
Stsc7g00026 700 Gene3D - 519 635 IPR023144 -
Stsc7g00026 700 ProSitePatterns Phenylalanine and histidine ammonia-lyases signature. 189 205 IPR022313 GO:0016841
Stsc7g00026 700 Gene3D Fumarase/aspartase (Central domain) 254 695 - -
Stsc7g00026 700 Pfam Aromatic amino acid lyase 54 518 IPR001106 -
Stsc7g00026 700 SUPERFAMILY L-aspartase-like 15 698 IPR008948 GO:0003824
Stsc7g00026 700 CDD PAL-HAL 52 516 IPR001106 -
Stsc7g00026 700 FunFam Phenylalanine ammonia-lyase 7 253 - -
Stsc7g00026 700 Gene3D - 7 253 IPR024083 -
Stsc7g00026 700 PANTHER HISTIDINE AMMONIA-LYASE 12 699 IPR001106 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc7g00026 Stsc-Chr7 112582 114961 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc7g00026 15 700 Monolignol Biosynthesis Gene Families AT2G37040 69.697 0.0 1018
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc7g00026 K10775 - gmx:100787872 1122.07