Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc7g00008 ATGGCGGAGGGTGAGGAAGTAGTAGTGGTATCTGACGAAGAAGCGTTCTTGTTTGCCATGGAACTAGCGGGTGCCTCAGCGGTTCCCATGGTGCTGAGATCAGCGTTGGAGCTCGGTATCATAGACACCATAGCTAAAGCTGGCCCCGGAGCATTCCTTTCAGTTGATGGAATAGTTTCTCAGCTCCCAACAACAATAAACAACCCTGATGCACCCGCCTTGCTTGACCGCATGTTGAAGCTTCTAGCAAGCTTCAAGATCCTGACTTGCAGGCTCCGTGGTGACGGTGATGAGAGGCAGTACCAGTACGGTGTGTCCCCTTTGGCGAAGTACTTTGTGAACAACCGTGATGGTTTCTCTTTGGTTCCTTCTTTTCTCATGCAACATCACAAAGTCCTTAAGGACATGTGGTATCATTTGACAGATTCAGTAAGGGAGGGTGGGCTTCCATTCGACAATGCTTATGGAATGACTTCGTTTGAGTTTCACAGCGTAAATCCAAGATTCAACGAGGTTTTCAACAACGGCATGTCCAATCACTCCACCATCATAATGCATAAGATTCTAGAGAATTACAATGGCTTTGAGGGTCTCCAATCTCTTGTTGATGTTGGTGGTGGCACTGGGGCTGTTATTAACATGATTCACTCCAAATATCCAAACATGAAGGCTATTAATTTTGACTTACCCCATGTCATCAAGGAAGCTCCCTCATATGAAGGCGTCCACCATGTTGGTGGAGACATGTTTCTTAGTGTTCCAAAAGCAGATGCTATTTTCATGAAGTGGATATGTCACGACTGGAACGACGAGCAATGTGTGAAGCTTCTGAAGAATTGCTATGAATCGCTTCCCGATGAGAAGGGGAAGGTGATATTGGCTGAATGCATCATCCCGGTGGCTCCGGAGGGTAGTGCGGCGGCCAAGACGGTGTTTCAGACGGATGTGATAATGTTGTGCCATAGCTCGGGTGGAAGAGAGAGGACCCAGAAAGAGTATGAAGCGTTGGCGAAGAGTGCTGGATTCCATGGTTTCCGAGTTGCTTGCTCTGCTTTCAACATGCATGTCATGGAATTCCTTAAGAAGCCTTCAAAATAA 1098 0.4709 MAEGEEVVVVSDEEAFLFAMELAGASAVPMVLRSALELGIIDTIAKAGPGAFLSVDGIVSQLPTTINNPDAPALLDRMLKLLASFKILTCRLRGDGDERQYQYGVSPLAKYFVNNRDGFSLVPSFLMQHHKVLKDMWYHLTDSVREGGLPFDNAYGMTSFEFHSVNPRFNEVFNNGMSNHSTIIMHKILENYNGFEGLQSLVDVGGGTGAVINMIHSKYPNMKAINFDLPHVIKEAPSYEGVHHVGGDMFLSVPKADAIFMKWICHDWNDEQCVKLLKNCYESLPDEKGKVILAECIIPVAPEGSAAAKTVFQTDVIMLCHSSGGRERTQKEYEALAKSAGFHGFRVACSAFNMHVMEFLKKPSK 365
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc7g00008 365 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 117 358 IPR029063 -
Stsc7g00008 365 Gene3D - 3 112 IPR036388 -
Stsc7g00008 365 FunFam Caffeic acid O-methyltransferase 113 361 - -
Stsc7g00008 365 FunFam Caffeic acid 3-O-methyltransferase 2 112 - -
Stsc7g00008 365 SUPERFAMILY "Winged helix" DNA-binding domain 12 117 IPR036390 -
Stsc7g00008 365 PIRSF O-mtase 1 361 IPR016461 GO:0008168
Stsc7g00008 365 PANTHER O-METHYLTRANSFERASE 20 345 IPR016461 GO:0008168
Stsc7g00008 365 Gene3D Vaccinia Virus protein VP39 113 361 IPR029063 -
Stsc7g00008 365 Pfam Dimerisation domain 30 83 IPR012967 GO:0046983
Stsc7g00008 365 Pfam O-methyltransferase domain 137 342 IPR001077 GO:0008171
Stsc7g00008 365 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 20 361 IPR016461 GO:0008168
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc7g00008 Stsc-Chr7 43121 44538 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc7g00008 8 362 Monolignol Biosynthesis Gene Families AT5G54160 60.894 3.13e-162 457
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc7g00008 K13066 - qsa:O6P43_020016 479.944