Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc79g00010 ATGGCACCCAGGAACCTACCCGCTGTTCTTTCCGGATCCAACCCGATCCAACAACTCTCAACAGAGATCCGATACAGAGGTGTCAGGAAGAGGCCATGGGGCCGTTACGCCGCAGAGATCCGCGATCCCGGCAAGAAGACACGTGTTTGGCTCGGCACTTTCGACACCGCGGAAGAGGCTGCACGTGCCTACGACACCGCCGCACGTGAGTTCCGCGGACCTAAGGCAAAGACCAATTTCCCCACCCCGTCCGAGCTCATCAACAGCGCCGCCGCGCGTAGTCCCAGCCAGAGCAGTACTCTCGACTCTTCCTCTCCTCCGCCGCCGGCGCTCGACCTCACACTCTCCCCCTTTGCCGCCTCCGCCGCCACCACAAGGAGGGTGTTCCCGGTGGCTCGCCCGGTTATGTACTTTGAAGCGTTTGCTCGTGCTGAGATGTGCGGGTTTGACCGCCCCGTTGCCGATTTCCGACGCGCCGCTGTTGCCGTTGCCGCCGCCGACGCAGCGCAAAGCGGTTCCGATTCTTCGTCCGTCGTGGACTACGAGCGCGTGCCTCATCGGAGACTGTTGGATCTTGACCTCAATGTTCCTCCTCCCCCTGAGGTAGCTTGCTCTGGCGGTTATGATGAGGAGCGTGCAACTGAAGGCATGAAATGGTCAGACGATGGAGTTTCCCAATGCCTCGCGATTTGA 693 0.6089 MAPRNLPAVLSGSNPIQQLSTEIRYRGVRKRPWGRYAAEIRDPGKKTRVWLGTFDTAEEAARAYDTAAREFRGPKAKTNFPTPSELINSAAARSPSQSSTLDSSSPPPPALDLTLSPFAASAATTRRVFPVARPVMYFEAFARAEMCGFDRPVADFRRAAVAVAAADAAQSGSDSSSVVDYERVPHRRLLDLDLNVPPPPEVACSGGYDEERATEGMKWSDDGVSQCLAI 230
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc79g00010 230 SMART rav1_2 24 87 IPR001471 GO:0003700|GO:0006355
Stsc79g00010 230 FunFam Ethylene-responsive transcription factor 2 24 82 - -
Stsc79g00010 230 MobiDBLite consensus disorder prediction 89 109 - -
Stsc79g00010 230 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 19 183 - -
Stsc79g00010 230 MobiDBLite consensus disorder prediction 89 112 - -
Stsc79g00010 230 SUPERFAMILY DNA-binding domain 24 82 IPR016177 GO:0003677
Stsc79g00010 230 Gene3D AP2/ERF domain 23 82 IPR036955 GO:0003700|GO:0006355
Stsc79g00010 230 PRINTS Ethylene responsive element binding protein signature 47 63 IPR001471 GO:0003700|GO:0006355
Stsc79g00010 230 PRINTS Ethylene responsive element binding protein signature 25 36 IPR001471 GO:0003700|GO:0006355
Stsc79g00010 230 Pfam AP2 domain 24 73 IPR001471 GO:0003700|GO:0006355
Stsc79g00010 230 CDD AP2 24 81 IPR001471 GO:0003700|GO:0006355
Stsc79g00010 230 ProSiteProfiles AP2/ERF domain profile. 24 81 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc79g00010 Stsc-Chr79 63459 65234 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc79g00010 13 164 AP2-EREBP Transcription Factor Family AT3G15210 53.801 6.13e-48 155
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Stsc79g00010 AP2 3.4e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc79g00010 K09286 - qsa:O6P43_029132 209.149