Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc798g00001 ATGTTTCCTTCCACTTTCGGTAGTTATAGCTCTTACCCTTGTTACCCTTCATCTTCTTCTTCTGCTCCTGCACCACCATACCCTCCTTTCCCTTTCTTTAACCCAGAAAGCAATAACAATGCTCCTAATTCAAACAACAACAACACCAGCACCAACACTTTCCTTCACCATGATCCAGTTTCTAATAATAATAACAATACTGCTACTGCTACTGTTATTCCTTACAGCATAGTACCTTCTTCTCATTCTCACCATCATCATCATGCTCCAACAATGCCAGAGAGCACACTCATGACCAATTTGGCAGTTGCAGATGCAATGTTCAAGCAAGAGTACTTCACTGCTGCTGCTGCTGCTGCTCATGCTGGTGCTGCTGGTGCTGCTGGTTCTTCTTCACACCATCTTCACCATCACCATTACGGCATGTCAAGCTTGATAACAAAGAGGCCAGCACCCAAGAAAGACAGGCACAGCAAGATTCACACTTCTCAGGGGCTGAGGGACAGAAGAGTGAGGCTTTCTATTGAGATTGCACGCAAGTTCTTTGATCTTCAAGACATGTTAGGGTTTGATAAAGCCAGCAACACTCTTGAGTGGCTCTTGACAAAGTCAAAGAGAGCAATTAAGGAGTTAGCTAGAAGCAAGCAGCAAAGTAGCAGTGGTAATTATAATGGTGGTGGTGGTGTTGCCATTAACAATAACAATAACAGCTTCTCTTCTTCCTCTTCTGATGAGGGTGAAGATGATGAAGTTGATTCAGTCATCAACCAACAACAACTCACTGATATTGATGGGATTCATGAACAAGGGGTTGTGGAGTCAAGGCTAAGAAGGGAACAGAAGGAGGAAGAATCAAGGGCAAAGATGAAGGAATCAAGGGAGAAAGCAAGGGCAAGAGCAAGGGAAAGGACTAATAGCAAGATTTGCTATAGTGAGCAAGAATTGATGATGAAGAAGAAAAGCCCTGCTGCAATAGCAATGGAGGAAGATCCTCAAATTCTAATGCAGCATCAACAATTGAGGTCACCAATGATTCAACCTCTTGAGGAATCTTCAATGAGATCATCACCAAAGCTGTTTCACCCTCATAACAATCTTGCAGGTGGAGGAGGAGGAGGAAGTAGTGAAGTCCCAAGAGATGATTTCAATGTTATTGAGGAATCCATTGTCATAAGGAGAAAGCTTAAGCAGTCTTTGATGTCTTCTTCTTCATCTTCTTCCAATAACCATCATCACCATCAAAATCATGTTATCCCTAAAGAAGCAACAGGCTTCAACAACAACAGTGACTACCACTGCTTTCCCAATTTATCATCACCAAGTTGGGAAGCTAATTCTGCTGCTGCTGCCGCCACTAATAATGGCCGCTCCAATGTTTGCACAATATCAAGCATGAATCTATCTACAAGGCTTCAGATCTTTGGAAAGTCTTGGGAAGAGTGCACCAATGCCCACCTATGA 1461 0.4298 MFPSTFGSYSSYPCYPSSSSSAPAPPYPPFPFFNPESNNNAPNSNNNNTSTNTFLHHDPVSNNNNNTATATVIPYSIVPSSHSHHHHHAPTMPESTLMTNLAVADAMFKQEYFTAAAAAAHAGAAGAAGSSSHHLHHHHYGMSSLITKRPAPKKDRHSKIHTSQGLRDRRVRLSIEIARKFFDLQDMLGFDKASNTLEWLLTKSKRAIKELARSKQQSSSGNYNGGGGVAINNNNNSFSSSSSDEGEDDEVDSVINQQQLTDIDGIHEQGVVESRLRREQKEEESRAKMKESREKARARARERTNSKICYSEQELMMKKKSPAAIAMEEDPQILMQHQQLRSPMIQPLEESSMRSSPKLFHPHNNLAGGGGGGSSEVPRDDFNVIEESIVIRRKLKQSLMSSSSSSSNNHHHHQNHVIPKEATGFNNNSDYHCFPNLSSPSWEANSAAAAATNNGRSNVCTISSMNLSTRLQIFGKSWEECTNAHL 486
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc798g00001 486 MobiDBLite consensus disorder prediction 213 242 - -
Stsc798g00001 486 MobiDBLite consensus disorder prediction 31 66 - -
Stsc798g00001 486 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 143 432 IPR005333 GO:0003700
Stsc798g00001 486 MobiDBLite consensus disorder prediction 128 165 - -
Stsc798g00001 486 MobiDBLite consensus disorder prediction 268 303 - -
Stsc798g00001 486 MobiDBLite consensus disorder prediction 354 379 - -
Stsc798g00001 486 Coils Coil 279 299 - -
Stsc798g00001 486 Pfam TCP family transcription factor 152 308 IPR017887 -
Stsc798g00001 486 MobiDBLite consensus disorder prediction 212 303 - -
Stsc798g00001 486 MobiDBLite consensus disorder prediction 36 66 - -
Stsc798g00001 486 ProSiteProfiles R domain profile. 290 307 IPR017888 -
Stsc798g00001 486 ProSiteProfiles TCP domain profile. 153 211 IPR017887 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc798g00001 Stsc-Chr798 4509 6223 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc798g00001 149 314 TCP Transcription Factor Family AT1G67260 42.045 4.52e-29 115
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Stsc798g00001 TCP 1.4e-43 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc798g00001 - - aip:107637396 531.561