Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc797g00001 ATGGCATCTGCTTCTTCTTCTTCAAGCTACTCAAATTCTCCATGTGCGGCATGCAAGTTCTTAAGAAGAAAATGCTTGCCGGATTGCATTTTTGCGCCGTATTTCCCTCCGGAAGAGCCTCAAAAATTCGCAAATGTTCACAAGATCTTCGGCGCGAGCAATGTAAGCAAGCTTCTCAACGAGGTCCAGCCTCACCAAAGGGAAGACGCGGTGAATTCTTTGGCATATGAAGCTGAAGCAAGGATCAAGGATCCAGTTTATGGTTGTGTTGGTGCAATTTCAGTGCTCCAAAGACAAGTTATTAGGCTTCAAAAGGAGCTTGATGCAACAAATGCTGATTTGATGAGATATTGCAATGAAGGAATTCCTAATTCTACTACTAATTTAGGAAGAAGGAATAATAGTAATAATAATAATAATTTGGGTGAAGGAGGTGGTGGTGGTTTTTATTACCCTCCTCCTTCTTCTTCTTCTGCTTGGAGCAATGAGCAATGA 495 0.4162 MASASSSSSYSNSPCAACKFLRRKCLPDCIFAPYFPPEEPQKFANVHKIFGASNVSKLLNEVQPHQREDAVNSLAYEAEARIKDPVYGCVGAISVLQRQVIRLQKELDATNADLMRYCNEGIPNSTTNLGRRNNSNNNNNLGEGGGGGFYYPPPSSSSAWSNEQ 164
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc797g00001 164 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 12 131 - -
Stsc797g00001 164 MobiDBLite consensus disorder prediction 123 164 - -
Stsc797g00001 164 MobiDBLite consensus disorder prediction 123 143 - -
Stsc797g00001 164 Pfam Lateral organ boundaries (LOB) domain 14 110 IPR004883 -
Stsc797g00001 164 Coils Coil 93 120 - -
Stsc797g00001 164 ProSiteProfiles LOB domain profile. 13 114 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc797g00001 Stsc-Chr797 5032 5625 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc797g00001 8 117 AS2 family AT3G27650 86.364 7.38e-71 209
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Stsc797g00001 LOB 1.7e-42 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc797g00001 - - gmx:100306630 227.254