Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc796g00001 ATGAAACCAAGATTTGATCTTGAATTAGAGGCCTCAGCAGCAGAATATGAATCTGAAGTTAGCAGCCAGGTTGCTTCCAACATATCCTCTCTTCAAGAAACCTCTGCAGGCCCTTCAACTGACACCTTATTAACAAACTCATACAATCTCTCGAATCAAATGGAGTTTGACACACTCTCACTTGATTTGACACTTAGCTTCGGCAACAATGAAACAGGGGAAAAAGCAGGGGATTCAATAGGACTCTCATTCTCTAGCACAAGTGAAAGCAGCAATGAACCAACTTTCCAAACTGGTGCTGCAACCGTGCCTAGAGTCTTCTCTTGCAATTACTGTCAGCGCAAGTTTTTCAGCTCGCAGGCTCTTGGCGGCCACCAGAATGCACACAAGAGGGAGCGAACGCTGGCGAAACGCGCCATGCGAATGGGACTATTCTCTGAGAGGTATGCTAGTTTAGCATCTCTGCCTCTTCATGGCTCTTTCAGATCCTTGGGGATTAAGGCACATTCTTCACTTCACCCCCAAGCATTTGCACCATCAATGAGGCCTCCTGAGATGAAAACCAATGCAAGGTTCGACCAAGGCTATGTTGGCCTTCCAATATTCTTGGAGGATGATGAGTCAGAACTGCTCTGGCCCGGTAGTTTCCGGCAGGTTGCCACCGAAAGAGGCGATAGCAATCAGAATTTCATGCTGGCGAGGAGTTCGAACTTGAGTTTTACTGAGGTGAATCCAGCAGTTGAGATAGAGAACTCTACACCTGAATTAACATTGAAGCTTTAA 783 0.4636 MKPRFDLELEASAAEYESEVSSQVASNISSLQETSAGPSTDTLLTNSYNLSNQMEFDTLSLDLTLSFGNNETGEKAGDSIGLSFSSTSESSNEPTFQTGAATVPRVFSCNYCQRKFFSSQALGGHQNAHKRERTLAKRAMRMGLFSERYASLASLPLHGSFRSLGIKAHSSLHPQAFAPSMRPPEMKTNARFDQGYVGLPIFLEDDESELLWPGSFRQVATERGDSNQNFMLARSSNLSFTEVNPAVEIENSTPELTLKL 260
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc796g00001 260 SUPERFAMILY beta-beta-alpha zinc fingers 105 134 IPR036236 -
Stsc796g00001 260 ProSiteProfiles Zinc finger C2H2 type domain profile. 107 134 IPR013087 -
Stsc796g00001 260 PANTHER C2H2 AND C2HC ZINC FINGERS SUPERFAMILY PROTEIN 21 194 IPR044246 GO:0009788
Stsc796g00001 260 FunFam Zinc finger protein 2 84 153 - -
Stsc796g00001 260 ProSitePatterns Zinc finger C2H2 type domain signature. 109 129 IPR013087 -
Stsc796g00001 260 Gene3D Classic Zinc Finger 85 153 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc796g00001 Stsc-Chr796 6805 9401 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc796g00001 105 260 C2H2 Transcription Factor Family AT1G66140 52.459 1.81e-53 172
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Stsc796g00001 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc796g00001 - - gmx:100794851 350.903