Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc78g00008 ATGTCAGCCACGTCGCCTTCACCGGCGGCTTCTGGTGCCACTCAATCTCCACAACAGCCGCCACCATCACCACCGGCTTCTGGAGCCACTCAACCTCCACAACAACCGCCACCATCACCACCATCTTCGCCTGCGCCTAACACCTCAGCTTCCCCACCGCCGTCGTCGTCAACGCCACCACCATCGACTTCAACCACGCCGTCTCAGTCCCCGCCACCGACGACGACAACGCCATCTTCTCCTCCTCCTCCAACCGTGCCGCCGCCGGTGCAACCGTCACCTCCGCCTTCAAAACCACCGCCTCCTGCTTCACCTCCTCCTTCGTCTGGAAACCTACCTCCGCCTCCAAAAGCTCCTCCGCCTTCAAGAGCACCTCCGCCAACCCCGCCAGAATCAGACCCTCCCCAATCGCCACCACCATCTCCGCCGCCGCCATCACCGGTTCCACCGAGAAGCTCTCCGCCACCATCAAACCCCCCTCCCACGCCCCCATCGAATCCTCCTAAGAGCACATCTCCACCCCCAAACTCACCGCCACCGGAGAATTCACCACCTCCTGTTCCTTCTCCCCCAACAACAGCCGTGCCGCCACCAAGAGGCTCCCCTCCGCCGCCACGGTCTGCGCCACCCCCAAAAACCTCGCCCCCACTTCAACCATCGGTGCCGCCTCCGGTGAATTCTTCACCCCCAAGTCCCGCATCTGTGCCGCCACCAAGATCATCGCCACCGCCGGCATCAACGCCTCCTTCCCGGAACTCACCTCCTCCTTCGATTTCTCCCCCAACAACTGCACCTCCTGCTCCTCCCACAGCACCTATCACTCAACCAGTACCTCCTTCGAATTCAACACCTCGGCCATCATCTTCCCCGCCACCCCCTAATCGGTTAGCGCCATCTCCGGCATCCATTCTCACTCCACCTCGAAACGGATCACAGACAGAGAATTCAGGTCCAACAGCTGGAGGAGGCGGTAATGGAATTGGTACTGCTGCAATAGTGGCTATTAGTTCAGTGGCTGGAATTCTGTTGTTTGGGATCATTGGAGTTGCAATTTGGTGCATGATGAAGAGGAAAAAGAAAAAGGTGCTTAGCAACGGTGGTTATGTCATGCCCACAAATCCTGCCTCATCTCCTGATTCAGATTCGTCGTTCCTTAAGGCACATTCTTCAGCTCCTCTTGTACAAAGCGGCTCTAGCAGTGATGTTTTGTATACACCATCTGATCCTGGTGGACTAGGCCNNNNNNNNNNATGGTTTTCATATGAAGAATTAATTAAGGCCACAAATGGTTTCTCAACCGAAAATCTCTTAGGCGAAGGTGGATTTGGTTCTGTGTATAAAGGATACCTGCCGGATGGGAGAGAGATAGCGGTCAAACAGCTGAAAATTGGCGGTGGTCAGGGAGAGAAAGAGTTCAAAGCTGAAGTTGAGATTATTAGTCGCATACATCATCGTCATCTGGTTTCGCTGGTTGGATATTGCATTCAAGATACCAGAAGACTGCTTGTCTATGACTATGTCCCCAATAATACCCTTTATTTTCATCTACATGAGGAAGGTAGGCCGGTGTTAGAGTGGGCAAACCGTGTAAAAATTGCAGCTGGTGCAGCTCGAGGGATAGCTTATCTCCATGAAGACTGCAATCCTCGGATTATTCACAGGGATATCAAGTCATCGAACATTCTTTTAGATTACAACTTTGAGGCTAAAGTTTCAGATTTTGGTCTAGCAAAATTAGCCCTTGATGCAAATACACATATAACCACGCGTGTCATGGGAACTTTTGGGTACGTAGCCCCTGAATATGCATCCAGTGGCAAATTAACTGAAAAGTCTGATGTATATTCCTTTGGGGTTGTGCTCCTGGAGCTCATTACCGGGCGAAAGCCAGTAGATACATCTCAACCCGTGGGAGATGAGAGTTTAGTTGAATGGGCTCGACCATTATTGAGTCATGTACTTGATAGTGGGGAGTTAGGGATTTTAACAGATCCAAGGCTAGAAAAGAACTACATTGAAAGTGAAATGTTCTGTATGATCGAGGTTGCTGCATCTTGTGTTCGGCATTCAGCTGCAAAGAGGCCTCGCATGGGACAGGTTGTTAGAGCTTTTGATAGCTTAGGAGCTTCTGACCTAACAAATGGATTGCGAGTTGGAGAAAGTGAGGCTTTTAACTCTGCGCAGCTATCTGAAGAAATAAGATTGTTTAGGAGAATGGCATTTGGTGATCAAAATTATAGCACTGACTTCTTTAGCCAGGATAGTTTAAATACGTGA 2277 0.5081 MSATSPSPAASGATQSPQQPPPSPPASGATQPPQQPPPSPPSSPAPNTSASPPPSSSTPPPSTSTTPSQSPPPTTTTPSSPPPPTVPPPVQPSPPPSKPPPPASPPPSSGNLPPPPKAPPPSRAPPPTPPESDPPQSPPPSPPPPSPVPPRSSPPPSNPPPTPPSNPPKSTSPPPNSPPPENSPPPVPSPPTTAVPPPRGSPPPPRSAPPPKTSPPLQPSVPPPVNSSPPSPASVPPPRSSPPPASTPPSRNSPPPSISPPTTAPPAPPTAPITQPVPPSNSTPRPSSSPPPPNRLAPSPASILTPPRNGSQTENSGPTAGGGGNGIGTAAIVAISSVAGILLFGIIGVAIWCMMKRKKKKVLSNGGYVMPTNPASSPDSDSSFLKAHSSAPLVQSGSSSDVLYTPSDPGGLGXXXXWFSYEELIKATNGFSTENLLGEGGFGSVYKGYLPDGREIAVKQLKIGGGQGEKEFKAEVEIISRIHHRHLVSLVGYCIQDTRRLLVYDYVPNNTLYFHLHEEGRPVLEWANRVKIAAGAARGIAYLHEDCNPRIIHRDIKSSNILLDYNFEAKVSDFGLAKLALDANTHITTRVMGTFGYVAPEYASSGKLTEKSDVYSFGVVLLELITGRKPVDTSQPVGDESLVEWARPLLSHVLDSGELGILTDPRLEKNYIESEMFCMIEVAASCVRHSAAKRPRMGQVVRAFDSLGASDLTNGLRVGESEAFNSAQLSEEIRLFRRMAFGDQNYSTDFFSQDSLNT 758
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc78g00008 758 SUPERFAMILY Protein kinase-like (PK-like) 414 702 IPR011009 -
Stsc78g00008 758 PRINTS Proline rich extensin signature 62 87 - -
Stsc78g00008 758 PRINTS Proline rich extensin signature 4 25 - -
Stsc78g00008 758 PRINTS Proline rich extensin signature 25 41 - -
Stsc78g00008 758 PRINTS Proline rich extensin signature 43 60 - -
Stsc78g00008 758 Gene3D Transferase(Phosphotransferase) domain 1 507 717 - -
Stsc78g00008 758 MobiDBLite consensus disorder prediction 15 300 - -
Stsc78g00008 758 MobiDBLite consensus disorder prediction 304 322 - -
Stsc78g00008 758 Gene3D Phosphorylase Kinase; domain 1 412 506 - -
Stsc78g00008 758 CDD STKc_IRAK 437 707 - -
Stsc78g00008 758 ProSitePatterns Serine/Threonine protein kinases active-site signature. 551 563 IPR008271 GO:0004672|GO:0006468
Stsc78g00008 758 FunFam Proline-rich receptor-like protein kinase PERK8 404 506 - -
Stsc78g00008 758 SMART serkin_6 431 704 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc78g00008 758 MobiDBLite consensus disorder prediction 1 328 - -
Stsc78g00008 758 ProSitePatterns Protein kinases ATP-binding region signature. 437 459 IPR017441 GO:0005524
Stsc78g00008 758 Pfam Protein kinase domain 432 638 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc78g00008 758 PANTHER PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK4 342 739 IPR047117 -
Stsc78g00008 758 FunFam proline-rich receptor-like protein kinase PERK8 507 718 - -
Stsc78g00008 758 ProSiteProfiles Protein kinase domain profile. 431 707 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc78g00008 Stsc-Chr78 68771 73236 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc78g00008 419 728 Trihelix Transcription Factor Family AT4G32710 62.300 9.15e-131 404
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_PERK-1 Stsc78g00008 Pkinase 8.9e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc78g00008 - - gmx:100794393 741.495