Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc788g00001 ATGGATTCCACTTCTCACTTCTTTAACTCTCCCACCTCCGATCACTCTTCCTCCTCCTCCTTCGGCTCCTCTCCAGAGTCGTTTTCGTGGAACGGATACCTTCCGTTCAACGAAAACGACCCTGAGGAGATGCTCCTCTACGGCATGATTGCCACCGCCGACACCCCTCACCAGCGGCCCCTTGAGGCCGCTAAGAGGGTGAAAGAGGAGGAGGTAAGTTCTGAGGAAAATGGCGGCGCAAATGAAAGGAAGGAGAAGTCGTACAGAGGTGTCCGGAGAAGACCATGGGGTAAGTTTGCAGCCGAGATAAGAGACTCAACTCGACACGGCATAAGGGTGTGGTTGGGGACATTCGATAGCGCGGAAGCTGCGGCTTTGGCTTATGATCAAGCGGCTTTTTCAATGAGGGGAACCGCGGCGATCCTTAATTTCCCGGTGGAGACGGTGAGGGAGTCGCTTAGGGAGATGAACTATGGTGGTGATGGAGAAGAAGGGTGCTCCCCTGTTGTAGCCTTGAAGAGGAAGCATTCATTGAGGAGGAAAATTGGTGTGAAGAAGAACAACAACAATGTTAAGGAAAGGGACAATGTTGATAATGCAGTGGTGTTTGAGGATCTTGGTGCTGATTACTTGGAACAATTGTTGATGTCATCTGATCAGATTCCTAATCCTTGGTGA 678 0.5074 MDSTSHFFNSPTSDHSSSSSFGSSPESFSWNGYLPFNENDPEEMLLYGMIATADTPHQRPLEAAKRVKEEEVSSEENGGANERKEKSYRGVRRRPWGKFAAEIRDSTRHGIRVWLGTFDSAEAAALAYDQAAFSMRGTAAILNFPVETVRESLREMNYGGDGEEGCSPVVALKRKHSLRRKIGVKKNNNNVKERDNVDNAVVFEDLGADYLEQLLMSSDQIPNPW 225
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc788g00001 225 FunFam Ethylene-responsive transcription factor 2 86 147 - -
Stsc788g00001 225 Pfam AP2 domain 87 137 IPR001471 GO:0003700|GO:0006355
Stsc788g00001 225 MobiDBLite consensus disorder prediction 1 26 - -
Stsc788g00001 225 SUPERFAMILY DNA-binding domain 87 147 IPR016177 GO:0003677
Stsc788g00001 225 PRINTS Ethylene responsive element binding protein signature 88 99 IPR001471 GO:0003700|GO:0006355
Stsc788g00001 225 PRINTS Ethylene responsive element binding protein signature 111 127 IPR001471 GO:0003700|GO:0006355
Stsc788g00001 225 MobiDBLite consensus disorder prediction 60 86 - -
Stsc788g00001 225 Gene3D AP2/ERF domain 86 147 IPR036955 GO:0003700|GO:0006355
Stsc788g00001 225 PANTHER DNA-BINDING DOMAIN 39 216 IPR044808 GO:0003700|GO:0009873
Stsc788g00001 225 ProSiteProfiles AP2/ERF domain profile. 87 145 IPR001471 GO:0003700|GO:0006355
Stsc788g00001 225 SMART rav1_2 87 151 IPR001471 GO:0003700|GO:0006355
Stsc788g00001 225 CDD AP2 86 146 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc788g00001 Stsc-Chr788 1633 2532 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc788g00001 34 219 AP2-EREBP Transcription Factor Family AT3G23240 60.847 9.60e-70 211
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Stsc788g00001 AP2 1.1e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc788g00001 K14516 - gmx:100790598 281.952