Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc784g00001 ATGGAAGCTAGTACCGGACTCTTTGCTGCCACCCATGACAACAATGATCTTGTAGTCATTCAAGGACACGACGAGCCTAGGCCTGTTAAGAATTTAGATGGGCAGCAATGCGAAATATGCGGAGACACGGTGGGACTAACAGTGGAGGGAGACTTGTTTGTAGCTTGCGAGGAATGTGGGTTTCCAGTGTGTAGGCCTTGCTACGAGTATGAAAGAAGGGAAGGAACTCAAGTTTGTCCCCAGTGCCATACTAGATACAAGCGTATCAAAGGAAGCCCAAGAGTAGAAGGAGATGAAGACGAAGACGATGTGGATGATATAGAACATGAATTCAAAATGCTAGAAGAAAAGGAAGAGTTGCGCCAAAGGAAGAAGACTACCGGATATTATGATGACGACAATGCTAATTCACCATCCTTCGCCAAGAAGGTGAACGGGGAGCTTCCTGTATCTACTTACCAGGAAAAAATTGATGGGAAAGAAAGAGTAGATGACTGGAAGTTGAACCAAGGAAATCTTTGGCCTGAAATTGATGCTTCAGTTGATCCCGAAAAGGCCATAAAAGATGAAAGTAGACAGCCACTGTCAAGGAAGGTGGCGATACCATCCGGAAGACTCAGCCCTTACAGGATGATGGTTGCGGCGAGGCTGGTGATTCTGTTGCTATTCTTTCAGTACAGAATCTTCCACCCTGTACCTGATGCAATTGGACTCTGGTTCACATCTCTTGTGTGTGAAATTTGGCTTGCATTCTCATGGCTTCTTGATCAGATTCCTAAATGGTTTCCCCTCGATCGCGAGACGTATATTGACCGTCTTTCAATCAGGTGTATTTCCTGA 840 0.4536 MEASTGLFAATHDNNDLVVIQGHDEPRPVKNLDGQQCEICGDTVGLTVEGDLFVACEECGFPVCRPCYEYERREGTQVCPQCHTRYKRIKGSPRVEGDEDEDDVDDIEHEFKMLEEKEELRQRKKTTGYYDDDNANSPSFAKKVNGELPVSTYQEKIDGKERVDDWKLNQGNLWPEIDASVDPEKAIKDESRQPLSRKVAIPSGRLSPYRMMVAARLVILLLFFQYRIFHPVPDAIGLWFTSLVCEIWLAFSWLLDQIPKWFPLDRETYIDRLSIRCIS 279
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc784g00001 279 SUPERFAMILY RING/U-box 21 107 - -
Stsc784g00001 279 Coils Coil 97 117 - -
Stsc784g00001 279 FunFam Cellulose synthase 19 110 - -
Stsc784g00001 279 Pfam Zinc-binding RING-finger 27 104 IPR027934 -
Stsc784g00001 279 CDD mRING-HC-C4C4_CesA 35 85 - -
Stsc784g00001 279 PANTHER X-BOX TRANSCRIPTION FACTOR-RELATED 192 273 - -
Stsc784g00001 279 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 20 110 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc784g00001 Stsc-Chr784 653 3621 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc784g00001 1 276 Cell Wall Biosynthesis AT5G17420 56.863 9.39e-105 325
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc784g00001 K10999 - gmx:100777270 422.935