Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc77g00005 ATGTTAATGTCAGGTAGAATGGATCAATTCAGCCAACAGTTTCACTCAGATCCATTTCAAGGTGGTGAGTTAATGGAAGTTCTTCAACCTTTTTTCAAAAGTCCTTCCACGTCAGCAACCACCACCACCACCACCACCTTCACAAACACATTTACTTCTTTACCCTCCTCATCATCTAATTCTCATCTACCTTCTTCAACTTCCCCCACCTTCAATTCTTCTTCTTCTTCCTCCTCCAACTTCTATTCTCCTTCTTTAATGTCTCCACAGCTCAATTTCAGCCAGAATTTCATTGGCTTTGAGCAAGTCTCCTTTTCTTCCTATCCTATTGGGCCGGACTACCAGATCCAGGCCCAACAGCAAGCCCAATTCGAAGCCCAACAGAACAACAGCAACACGCTGAGCTTCCTATGCCCGAAGCCAGTTCCGATGAAGCAAAGCGGAACCCCGGCGAAGGCAACGAAGCTGTACAGAGGCGTACGGCAGAGACACTGGGGAAAATGGGTGGCTGAGATCAGACTCCCAAAGAATCGAACTCGGCTTTGGCTTGGAACCTTCGAAACTGCGGAAGAAGCTGCTTTGGCTTATGACAAAGCAGCTTTTAAGCTAAGAGGTGATTTCGCGAAGCTAAATTTCCCTAACCTTAAGCACCACGGTTCTTGCGTCGTTGGCGGCGGTTTGGGCGAGTATAGGCCTCTTCACTCCGCCGTTGATGCCAAGTTGGATGCCATTTGTGAGAATCTCGCTGAGATTCAGAAACAGGGGAAGCAGGAGAAGAAGCCGCCTGTGATAAGGTCAAAGTCAAAGTCAAACCCAGTAATTCCTAAGGTAGAAGAAACTGAAGAAGCCTCTGGCTCTGATAGCTCTTCGGCTTTGTCGGATCTTACGTTTGATGACGTCACTGAGTTACAGTGGGATCTTCCTTCAGAACATTTTAATCTGCAGAAGTTCCCTTCTTATGAGATCGATTGGGATTCTTTGTGA 984 0.4695 MLMSGRMDQFSQQFHSDPFQGGELMEVLQPFFKSPSTSATTTTTTTFTNTFTSLPSSSSNSHLPSSTSPTFNSSSSSSSNFYSPSLMSPQLNFSQNFIGFEQVSFSSYPIGPDYQIQAQQQAQFEAQQNNSNTLSFLCPKPVPMKQSGTPAKATKLYRGVRQRHWGKWVAEIRLPKNRTRLWLGTFETAEEAALAYDKAAFKLRGDFAKLNFPNLKHHGSCVVGGGLGEYRPLHSAVDAKLDAICENLAEIQKQGKQEKKPPVIRSKSKSNPVIPKVEETEEASGSDSSSALSDLTFDDVTELQWDLPSEHFNLQKFPSYEIDWDSL 327
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc77g00005 327 ProSiteProfiles AP2/ERF domain profile. 156 213 IPR001471 GO:0003700|GO:0006355
Stsc77g00005 327 SMART rav1_2 156 219 IPR001471 GO:0003700|GO:0006355
Stsc77g00005 327 MobiDBLite consensus disorder prediction 53 74 - -
Stsc77g00005 327 PRINTS Ethylene responsive element binding protein signature 179 195 IPR001471 GO:0003700|GO:0006355
Stsc77g00005 327 PRINTS Ethylene responsive element binding protein signature 157 168 IPR001471 GO:0003700|GO:0006355
Stsc77g00005 327 Gene3D AP2/ERF domain 156 214 IPR036955 GO:0003700|GO:0006355
Stsc77g00005 327 SUPERFAMILY DNA-binding domain 156 213 IPR016177 GO:0003677
Stsc77g00005 327 MobiDBLite consensus disorder prediction 255 293 - -
Stsc77g00005 327 CDD AP2 155 215 IPR001471 GO:0003700|GO:0006355
Stsc77g00005 327 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF061 14 327 - -
Stsc77g00005 327 FunFam Ethylene-responsive transcription factor 2 155 214 - -
Stsc77g00005 327 Pfam AP2 domain 157 205 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc77g00005 Stsc-Chr77 62497 64351 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc77g00005 21 327 AP2-EREBP Transcription Factor Family AT1G78080 47.181 4.15e-77 238
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Stsc77g00005 AP2 2.2e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc77g00005 K09286 - gmx:732559 290.426