Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc774g00005 ATGGAGAAGCACAAATGCAAGCTATGCTTCAGGAACTTCTCTAATGGAAGGGCTTTGGGAGGACACATGAGGTCTCACATGATGAACCTCCACGTCCCTCCAAAGCCGAACGAATCGCCGCCGCCGTCTCCGCCTACGATTCAACTCAGCTTCGAGGCTGAGTCTTCAACTCCGCCATCGCCATCGGCGTCTTCATCGTCTTATTTCGGGAGAGAAGACGATACGAGCTTGTACTATGGCCTCAGGGAGAATCCGAAGAGAAGCTTCAGGATCGCGGATCCTGAGTTCTCGTTCGTCGCCGCCGGAGACACCGGATCGGTTATACTCCAAGAAGATCGAGAGAGCGAGACGGAGTCTTCAAGGAACGTCACCAAGATAAGATCCAAACGAGCGTGGAGGCTCGGCGGCGGCGGTGGAAGTGGTGGTGGAAGTGGCGGTGGCGGTGGATTTAATAGCAAGAGGGTGAAACTGAGCCAACTCGGTAACAACAGCAATAACAAGAACGAGTCAGCGAGTTCGGTTTCTAATGCAACGACGGAAGAAGACATCGCATTATGGCTCATGATGCTGTCACGTGACACTGATAACAATTGGAAGATTAATCACAAGATCAACATAAACATTGAAGAGCAAGAATTCGAAGACGAGGACGAAGAAGACGACGAGGAAGAAGAGGAGGAAGACGAAGAGGAAGAAGAAGAAGAGGAGGAAGACGAAGGCGAAGAGAGTGATGAATATGAGGTTGTGAAGAACAAAGCGAAGTCGAATAAGGTGAGAGGAGGAAGGTACAAATGCGAGACGTGTAACAAAGTTTTTAGGTCTTACCAAGCTTTGGGCGGACATAGAGCGAGTCACAAGAAGATGAAGATGGATAATAATAATAATAATAATTATAACAACTCTGAATTCATGGTTGTAGATGATCACGTTGATGATGAGAATGTTAACAATACTACTTCTGCTGCTATTGCTATTCCTATTACTACTACTACCATGCCGGAAAATAGTAACAATAACAACAATGGAAGCAATAATTCTACCAAGAAGATCCATGAATGCCCGGTTTGTTTCCGGGTTTTCGCCTCCGGTCAAGCCCTTGGCGGACACAAAAGAACTCACGTTACTACCGTCTCGACTCCTACTATCACTACGAGAGCAATAGCAGAAGTAAAAGCAGAAGCAGAAGCAATCGCGGCCTCGAAGGCGGCGGCTGCTGCTGCTAGCTCCGCGAAGCTAGGAAGAGAGAGTTTCATAGATCTTAACCTCCCTGCTCCGGCCGAAGAAGATGATGCGAGCCAATTCGAGGATTCTGCGGTTTCCGATGCAGAGTTTGTGAATCCGGTGAAGGTTTTTCCTAGATGA 1362 0.4787 MEKHKCKLCFRNFSNGRALGGHMRSHMMNLHVPPKPNESPPPSPPTIQLSFEAESSTPPSPSASSSSYFGREDDTSLYYGLRENPKRSFRIADPEFSFVAAGDTGSVILQEDRESETESSRNVTKIRSKRAWRLGGGGGSGGGSGGGGGFNSKRVKLSQLGNNSNNKNESASSVSNATTEEDIALWLMMLSRDTDNNWKINHKININIEEQEFEDEDEEDDEEEEEEDEEEEEEEEEDEGEESDEYEVVKNKAKSNKVRGGRYKCETCNKVFRSYQALGGHRASHKKMKMDNNNNNNYNNSEFMVVDDHVDDENVNNTTSAAIAIPITTTTMPENSNNNNNGSNNSTKKIHECPVCFRVFASGQALGGHKRTHVTTVSTPTITTRAIAEVKAEAEAIAASKAAAAAASSAKLGRESFIDLNLPAPAEEDDASQFEDSAVSDAEFVNPVKVFPR 453
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc774g00005 453 ProSiteProfiles Zinc finger C2H2 type domain profile. 4 36 IPR013087 -
Stsc774g00005 453 MobiDBLite consensus disorder prediction 155 177 - -
Stsc774g00005 453 ProSitePatterns Zinc finger C2H2 type domain signature. 6 26 IPR013087 -
Stsc774g00005 453 Coils Coil 206 243 - -
Stsc774g00005 453 Gene3D Classic Zinc Finger 260 373 - -
Stsc774g00005 453 PANTHER ZINC FINGER PROTEIN ZAT1-RELATED 1 446 IPR044303 GO:0006355
Stsc774g00005 453 MobiDBLite consensus disorder prediction 210 244 - -
Stsc774g00005 453 MobiDBLite consensus disorder prediction 208 253 - -
Stsc774g00005 453 MobiDBLite consensus disorder prediction 132 177 - -
Stsc774g00005 453 ProSitePatterns Zinc finger C2H2 type domain signature. 265 285 IPR013087 -
Stsc774g00005 453 ProSiteProfiles Zinc finger C2H2 type domain profile. 263 290 IPR013087 -
Stsc774g00005 453 ProSitePatterns Zinc finger C2H2 type domain signature. 353 373 IPR013087 -
Stsc774g00005 453 ProSiteProfiles Zinc finger C2H2 type domain profile. 351 373 IPR013087 -
Stsc774g00005 453 MobiDBLite consensus disorder prediction 48 70 - -
Stsc774g00005 453 SUPERFAMILY beta-beta-alpha zinc fingers 262 373 IPR036236 -
Stsc774g00005 453 MobiDBLite consensus disorder prediction 27 70 - -
Stsc774g00005 453 Pfam C2H2-type zinc finger 4 27 - -
Stsc774g00005 453 Pfam C2H2-type zinc finger 262 287 - -
Stsc774g00005 453 Pfam C2H2-type zinc finger 351 373 - -
Stsc774g00005 453 SMART c2h2final6 263 285 IPR013087 -
Stsc774g00005 453 SMART c2h2final6 4 26 IPR013087 -
Stsc774g00005 453 SMART c2h2final6 351 373 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc774g00005 Stsc-Chr774 24248 25669 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc774g00005 1 432 C2H2 Transcription Factor Family AT3G60580 36.009 1.14e-54 182
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Stsc774g00005 zf-C2H2_6 1.8e-11 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc774g00005 - - adu:107475462 559.296