Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc774g00004 ATGGCTTTGATTGTAGATCAACAATCAAACTTCAAACACTTTTGTAAAATTTGCAAAAAAGGATTTGGTTGTGGAAGAGCTCTAGGGGGACACATGAGGGCTCATGGAATAGGAGATGAATCAGGTCACATGGATGATGATGACCCAGCTAGTGATTGGGAAGATAGGCTTGGTGGAAATGTTCCACCAAGCAACAAGCGCATGTATGCTTTAAGAACAAACCCTAATAGGTTAAAGAGTTGTAGGGTGTGTGAAAATTGTGGCAAGGAGTTTTTGTCTTGGAAATCCTTCCTTGAGCATGGTAAATGCACCTCCGAGGATGCAGAGTCCCTTGTATCTTCTCCCGGGTCTGATGCTGCTGACGATGGCATCGAACCCAGGAGAGGATGCGGATGGTCTAAAAGAAAGAGGTCGTTAAGAGCAAAAGTTGGTAGCTTCAATTACAATTGTCCCTCCAGCGAGGAGGAAGACCTAGCGAATTGCTTAATGATGTTATCCAACGCAATTGTGGACCCTCTCACGGTGGCTGCAGTTGAGCTGGAGGAGTCGTGCGCCTCGGCGAGCAAAGACGAGGAACAAAGAAGAAACCCTATGAACTTGATTGGGCCATTCTCGTCGTACAAAGTTCCAAACAATGATAACAACAACAATAACAATAAAGCTAAGGGTGTTGCTAAGGGCTTATTTGAATGCAAAGCATGCAAGAAGGTTTTCAACTCACACCAAGCGTTGGGTGGCCATAGAGCAAGCCACAAGAAGGTTAAGGGATGCTTCGCGGCGAGGCTAGACAACCTCGACGACAGCGTCGCAGAGGATGACGTCATCACACAGGAAGAGTTTTTCCCTACTAAATCAAATTCAATATTCCAATTTGATCATCAAAGCCCTCACCACCATAACCAAAACAATTCAGCCACATTGGCATCATCATCAAAGAGGAAATCAAAGGTTCATGAATGCTCCATTTGTCATAGAAGCTTCTCCTCGGGACAAGCATTGGGAGGCCACAAAAGGTGCCATTGGATCACATCAAATGCACCCGACACTTCGACGTTGGCTAGGTTTCAACAATTTCAGGAACATTTGGATCAAATACCAAAGTTTGATTCTGATCCTCTAGTTGATCTCAAACTCGACCTCAACCTTCCTGCACCAATCAATGATCTTGCTAGAAGGAATAATAACAACAATAACAATGTTAATGTTTCCACAGAAATCTTCTTGAAGCCATGGGCGGGAGGAGGAGGAGGAGGAATTACTGCAAAAAAGGAAAACAATACAAACATGAAAGATGATAATAGCAACAACAATAACAATAGCCAGAGTCAAATTAGTTACCATCACCCCACCAACCATAACCAAATTGATCAAAATGAAAATGTTGTTGATGGGAACAAGAACAATAGTAATAATCCCAACAACAACAACAGTATCAATGATTTGATGCAAAGTGTGGATAATGAAGCTGATAGTAAGATCAAGCTAGCAAAACTTAGTGAGCTAAAGGACATGAACATCGGTGGCAGTTCTTCACCATGGTTGCAGGTTGGAATTGGTTCAACAACTACTGATGTTGGGACCGATCAGTAA 1590 0.4289 MALIVDQQSNFKHFCKICKKGFGCGRALGGHMRAHGIGDESGHMDDDDPASDWEDRLGGNVPPSNKRMYALRTNPNRLKSCRVCENCGKEFLSWKSFLEHGKCTSEDAESLVSSPGSDAADDGIEPRRGCGWSKRKRSLRAKVGSFNYNCPSSEEEDLANCLMMLSNAIVDPLTVAAVELEESCASASKDEEQRRNPMNLIGPFSSYKVPNNDNNNNNNKAKGVAKGLFECKACKKVFNSHQALGGHRASHKKVKGCFAARLDNLDDSVAEDDVITQEEFFPTKSNSIFQFDHQSPHHHNQNNSATLASSSKRKSKVHECSICHRSFSSGQALGGHKRCHWITSNAPDTSTLARFQQFQEHLDQIPKFDSDPLVDLKLDLNLPAPINDLARRNNNNNNNVNVSTEIFLKPWAGGGGGGITAKKENNTNMKDDNSNNNNNSQSQISYHHPTNHNQIDQNENVVDGNKNNSNNPNNNNSINDLMQSVDNEADSKIKLAKLSELKDMNIGGSSSPWLQVGIGSTTTDVGTDQ 529
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc774g00004 529 MobiDBLite consensus disorder prediction 290 311 - -
Stsc774g00004 529 Pfam C2H2-type zinc finger 229 253 - -
Stsc774g00004 529 Pfam C2H2-type zinc finger 13 35 - -
Stsc774g00004 529 Pfam C2H2-type zinc finger 317 342 - -
Stsc774g00004 529 ProSitePatterns Zinc finger C2H2 type domain signature. 320 340 IPR013087 -
Stsc774g00004 529 ProSiteProfiles Zinc finger C2H2 type domain profile. 318 340 IPR013087 -
Stsc774g00004 529 MobiDBLite consensus disorder prediction 38 59 - -
Stsc774g00004 529 MobiDBLite consensus disorder prediction 38 54 - -
Stsc774g00004 529 SUPERFAMILY beta-beta-alpha zinc fingers 228 340 IPR036236 -
Stsc774g00004 529 ProSitePatterns Zinc finger C2H2 type domain signature. 231 251 IPR013087 -
Stsc774g00004 529 SMART c2h2final6 229 251 IPR013087 -
Stsc774g00004 529 SMART c2h2final6 318 340 IPR013087 -
Stsc774g00004 529 SMART c2h2final6 13 35 IPR013087 -
Stsc774g00004 529 MobiDBLite consensus disorder prediction 418 481 - -
Stsc774g00004 529 PANTHER OS02G0659100 PROTEIN 2 523 - -
Stsc774g00004 529 ProSitePatterns Zinc finger C2H2 type domain signature. 15 35 IPR013087 -
Stsc774g00004 529 MobiDBLite consensus disorder prediction 430 481 - -
Stsc774g00004 529 ProSiteProfiles Zinc finger C2H2 type domain profile. 229 256 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc774g00004 Stsc-Chr774 15206 16795 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc774g00004 134 413 C2H2 Transcription Factor Family AT1G02040 31.164 5.11e-31 121
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Stsc774g00004 zf-C2H2_6 1.7e-12 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc774g00004 - - ahf:112720137 878.241