Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc774g00002 ATGTTCTTCATATCCTCTTGTTATTGCATCAACCCGAAATTCTTATTGTTCAACACTTCTTCCAAAGCTGATGCAAATGAGAACCAAGGGCAACAAGCATCAGCTACATGGTATGGATCACCAGATGGGGCTGGAACAGATGGGGGTGCTTGTGGTTATGGTAGCAGTGTGGGGAATCCTCCACTCAATAAATTGGTATCAGCTGGTGGCTCTAATATTTTCAAAAATGGAGAAGGGTGTGGTGCTTGTTATGAGGTGAAATGCACAGAAAATGAAGCATGCTCCGGCAATCCAGTGATAGTGATGATATCAGATCAATGCCCTGGATGCCCAGCCACTCATTTCGATCTCAGTGGTTTTGCTTTTGGTGCAATGGCCAAAAACCAACAGCAAAATAACCTTCGCAATGCTGGACGCATCAACCTTCACTATCAAAGGGTTTCATGCTCGTTTGGAACGCCTATAGTATTCACCATAGATAATGGAGCAAACCCATACTACTTTGCAACCGAAATTGAATATCAAAGTGGGGATGGAGATCTTGTAGATATACAATTGAAGCTAGCAAATCAAAATTCATGGATTCCAATGAATCGTTTATGGGGTGCAAGATGGGCTCTCAACTATGGTTCTTTAATGCAACCTCCATTTTCTATTAAGCTCACTCAGACTAATGCCAATGGCTCCTCCAACACCATTGAAGCTACCAATGTTATCCCTGTTGGTTGGCAACCTGGCCAAGTTATTCGATCATTCTCAAATTTTTAA 768 0.4219 MFFISSCYCINPKFLLFNTSSKADANENQGQQASATWYGSPDGAGTDGGACGYGSSVGNPPLNKLVSAGGSNIFKNGEGCGACYEVKCTENEACSGNPVIVMISDQCPGCPATHFDLSGFAFGAMAKNQQQNNLRNAGRINLHYQRVSCSFGTPIVFTIDNGANPYYFATEIEYQSGDGDLVDIQLKLANQNSWIPMNRLWGARWALNYGSLMQPPFSIKLTQTNANGSSNTIEATNVIPVGWQPGQVIRSFSNF 255
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc774g00002 255 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 166 251 IPR007117 -
Stsc774g00002 255 SMART dpbb_1 66 144 IPR007112 -
Stsc774g00002 255 SUPERFAMILY PHL pollen allergen 154 248 IPR036749 -
Stsc774g00002 255 PRINTS Expansin/Lol pI family signature 29 44 IPR007118 GO:0005576
Stsc774g00002 255 PRINTS Expansin/Lol pI family signature 137 153 IPR007118 GO:0005576
Stsc774g00002 255 PRINTS Expansin/Lol pI family signature 47 65 IPR007118 GO:0005576
Stsc774g00002 255 PRINTS Expansin/Lol pI family signature 70 88 IPR007118 GO:0005576
Stsc774g00002 255 PRINTS Expansin/Lol pI family signature 194 208 IPR007118 GO:0005576
Stsc774g00002 255 Gene3D - 15 150 IPR036908 -
Stsc774g00002 255 SUPERFAMILY Barwin-like endoglucanases 29 151 IPR036908 -
Stsc774g00002 255 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 48 154 IPR007112 -
Stsc774g00002 255 Pfam Expansin C-terminal domain 155 240 IPR007117 -
Stsc774g00002 255 Gene3D - 151 255 IPR036749 -
Stsc774g00002 255 PRINTS Major pollen allergen Lol pI signature 88 98 IPR005795 GO:0005576|GO:0019953
Stsc774g00002 255 PRINTS Major pollen allergen Lol pI signature 126 141 IPR005795 GO:0005576|GO:0019953
Stsc774g00002 255 PRINTS Major pollen allergen Lol pI signature 173 188 IPR005795 GO:0005576|GO:0019953
Stsc774g00002 255 PRINTS Major pollen allergen Lol pI signature 68 79 IPR005795 GO:0005576|GO:0019953
Stsc774g00002 255 PRINTS Major pollen allergen Lol pI signature 157 172 IPR005795 GO:0005576|GO:0019953
Stsc774g00002 255 PRINTS Major pollen allergen Lol pI signature 227 244 IPR005795 GO:0005576|GO:0019953
Stsc774g00002 255 Pfam Lytic transglycolase 67 143 IPR009009 -
Stsc774g00002 255 CDD DPBB_EXPB_N 32 149 - -
Stsc774g00002 255 PANTHER EXPANSIN-B3 16 253 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc774g00002 Stsc-Chr774 5281 7267 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc774g00002 8 255 Expansin Gene Family AT1G65680 46.825 1.06e-79 239
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc774g00002 - - var:108346495 309.686