Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc771g00001 ATGGATCCTGACGCATTCACAACTAGCCTATTCAAGTGGGACCCACGCACCGTCCTCCCTCCGCCTCCCTCCTCCGCCACTCGCCCCCCACCACCGCCTCACATCCTCGACTACACCGTCGCACCACCCTCCGCCATCCCCTTCCCCCCGCCGCCCAAGCGACCCGACCTCGGAGGCCTCGACGACCTCTTCCACGCCTACGGAATCCGCTACTTCACGGCGGCGAAGATGGCGGAGCTAGGGTTCACGGTGAGGACTCTCGTTGACATGAAAGACGATGAGATCGACGATATGATGAACAGCCTGTCTCAGATCTTCCGTTGGGATCTTCTGGTCGGTGAGAGGTACGGCGTTAAGGCCGCCGTTAGAGCTGAGCGCCGCCGTCTTGAGGAGGAGGAGCTTCTCAAACGCCGTAACTTCCTCTGTAGCAACACTGATACCACCACCAACGCCCTTGACGCTCTCTCTCAAGAAGGTTTGTCGGAGGAACCGGTGGTGCAACAAGAGAAAGAGGCGGCGGGAAGCGGAGGAGGGAGCACGTGGGAGGTGGTTGGAGGAGAGGAGATGAGAAGGAAGCAACAAAGGAGGAGGAGAAGAAGCAACAAAATAAAAGCAATAGTAAGCAGAAGCAATGAGGATGGTGAAGAAGAGGAATTAGAATTAGAAGGAGATGAAGAAGAGAAGAAGGAGATGAATGGAGAGAGGCAAAGGGAGCATCCCTTCATAGTGACTGAGCCTGGGGAAGTGGCACGTGGCAAGAAGAATGGTTTGGACTACCTTTTTCATCTCTATGAACAATGCCGTGAGTTCTTGATCCAAGTTCAAGCCATTGCTAAGGACCGTGGTGAAAAATGCCCCACCAAGGTGACAAACCAAGTATTCAGGTATGCAAAGAAAGCAGGTGCAAGCTACATCAACAAGCCAAAGATGAGGCACTACGTCCATTGCTACGCCCTACACTGCCTCGACGAGGATGCCTCGAACGAGCTCCGCCGAACCTTCAAGGAGAGAGGCGAGAACGTTGGCGCTTGGAGGCAAGCCTGTTACAAGCCTCTAGTCGCCATCGCCGCTCGCCAGGGTTGGGACATTGATGCCATCTTCAATGCTCATCCCCGCCTTTCCATTTGGTACGTCCCAACTAAGCTCCGCCAGCTTTGTCATGCCGAGAGCAACAGCGCAGCCGCCGTTGTGGCCGCGGCCGCCTCTACCTCTGTTTCCCCGGCAACTGCCCAACTTCCTTTCTGA 1245 0.5558 MDPDAFTTSLFKWDPRTVLPPPPSSATRPPPPPHILDYTVAPPSAIPFPPPPKRPDLGGLDDLFHAYGIRYFTAAKMAELGFTVRTLVDMKDDEIDDMMNSLSQIFRWDLLVGERYGVKAAVRAERRRLEEEELLKRRNFLCSNTDTTTNALDALSQEGLSEEPVVQQEKEAAGSGGGSTWEVVGGEEMRRKQQRRRRRSNKIKAIVSRSNEDGEEEELELEGDEEEKKEMNGERQREHPFIVTEPGEVARGKKNGLDYLFHLYEQCREFLIQVQAIAKDRGEKCPTKVTNQVFRYAKKAGASYINKPKMRHYVHCYALHCLDEDASNELRRTFKERGENVGAWRQACYKPLVAIAARQGWDIDAIFNAHPRLSIWYVPTKLRQLCHAESNSAAAVVAAAASTSVSPATAQLPF 414
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc771g00001 414 MobiDBLite consensus disorder prediction 1 53 - -
Stsc771g00001 414 Gene3D Protein LEAFY 231 401 IPR038276 -
Stsc771g00001 414 MobiDBLite consensus disorder prediction 158 243 - -
Stsc771g00001 414 Pfam Floricaula / Leafy protein SAM domain 56 133 IPR035079 -
Stsc771g00001 414 Coils Coil 214 234 - -
Stsc771g00001 414 PANTHER PROTEIN LEAFY 1 401 IPR002910 GO:0003677|GO:0006355
Stsc771g00001 414 MobiDBLite consensus disorder prediction 16 53 - -
Stsc771g00001 414 Pfam DNA Binding Domain (C-terminal) Leafy/Floricaula 232 394 IPR035209 GO:0003677
Stsc771g00001 414 MobiDBLite consensus disorder prediction 226 243 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc771g00001 Stsc-Chr771 9807 13976 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc771g00001 1 392 Orphan Transcription Factor Family AT5G61850 61.275 7.87e-153 437
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LFY Stsc771g00001 C_LFY_FLO 2.8e-107 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc771g00001 - - gsj:114416001 556.599