Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc76g00004 ATGGCAATTTCAACAGCTGCAGCAGCCGCCACTCTTTCTTCTAAGTTATCACCGTTACATGCATCCACCGCTTCTTCTTCTTCTTCAACCACCGTCACCGCCACCGTCTTCCGTTCTTCCGCCGCTACCAAACTCTCCTCCTCCTTCCTCAACCCTTCCACCATCCTCCACCTCACACCTTCTTCAACTTCCACCTCAACGCCTACCACCACTCGCCGCAAAACCTTCACCGTACGCGCCGCGCGTGGCAAATTCGAGCGCAAGAAGCCACACGTCAACATCGGAACCATCGGCCACGTCGACCACGGCAAGACTACTCTCACCGCCGCCCTCACCATGGCCCTCGCCGCCCTCGGAAACAGCGCTCCCAAGAAGTACGACGAGATCGACGCCGCGCCGGAAGAGAGGGCGCGTGGAATCACCATCAACACCGCGACGGTGGAGTACGAGACGGAGAACCGCCACTATGCGCACGTGGACTGCCCTGGACACGCTGATTACGTCAAGAACATGATCACCGGAGCTGCGCAGATGGACGGAGCTATATTGGTGGTTTCCGGTGCCGACGGTCCCATGCCGCAGACTAAGGAGCACATCCTTCTTGCTAAGCAAGTTGGTGTTCCGAACATGGTTGTCTTCCTCAACAAGCAAGACCAGGTGGACGATGAGGAGCTTTTGCAGCTTGTGGAGCTTGAGGTTCGTGAGCTTCTGTCCTCATATGAGTTCCCTGGTGATGACATTCCTATCATTTCCGGTTCTGCTCTGTTGGCCTTGGAAGCTTTGATGGCAAATCCTGCAATCAAGCGCGGTGATAATGAGTGGGTGGATAAGATTTATCAACTCATGGATTCTGTGGATGACTACATTCCCATCCCTCAGCGCCAAACCGATCTACCCTTCTTGCTTGCGGTAGAAGATGTGTTTTCCATAACCGGTCGTGGAACAGTGGCCACAGGTCGTGTTGAGAGGGGAACCATTAAGGTTGGAGATACCGTTGACCTTGTTGGTATCAGGGAAACTAGGAACACTACCGTGACTGGTGTGGAAATGTTCCAGAAGATTCTTGATGAGGCCATGGCTGGGGACAATGTAGGGTTGTTGCTTAGGGGTATTCAGAAGGTTGATATTCAGAGAGGGATGGTTTTGGCCAAGCCCGGAACCATTACACCACACACAAAGTTCAGCGCAATCGTCTATGTTTTGAAGAAGGAAGAAGGAGGGAGGCACTCGCCTTTCTTTGCCGGCTACAGGCCTCAGTTCTACATGAGGACCACCGATGTCACCGGCAAGGTTACTCAAATTATGAACGACAAGGACGAGGAATCAAAGATGGTTATGCCTGGCGATCGTGTTAAGATGGTGGTCGAGCTTATCCAGCCCGTGGCTTGCGAACAGGGAATGAGGTTCGCCATTAGAGAAGGAGGGAAGACCGTTGGAGCCGGTGTTATCCAATCTATCATTGAATAA 1467 0.529 MAISTAAAAATLSSKLSPLHASTASSSSSTTVTATVFRSSAATKLSSSFLNPSTILHLTPSSTSTSTPTTTRRKTFTVRAARGKFERKKPHVNIGTIGHVDHGKTTLTAALTMALAALGNSAPKKYDEIDAAPEERARGITINTATVEYETENRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSGADGPMPQTKEHILLAKQVGVPNMVVFLNKQDQVDDEELLQLVELEVRELLSSYEFPGDDIPIISGSALLALEALMANPAIKRGDNEWVDKIYQLMDSVDDYIPIPQRQTDLPFLLAVEDVFSITGRGTVATGRVERGTIKVGDTVDLVGIRETRNTTVTGVEMFQKILDEAMAGDNVGLLLRGIQKVDIQRGMVLAKPGTITPHTKFSAIVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGKVTQIMNDKDEESKMVMPGDRVKMVVELIQPVACEQGMRFAIREGGKTVGAGVIQSIIE 488
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc76g00004 488 FunFam Elongation factor Tu 295 423 - -
Stsc76g00004 488 Gene3D Translation factors 427 487 - -
Stsc76g00004 488 Hamap Elongation factor Tu [tuf]. 80 488 IPR004541 GO:0003746|GO:0005525|GO:0006414
Stsc76g00004 488 SUPERFAMILY EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 387 487 IPR009001 -
Stsc76g00004 488 CDD EFTU_II 300 386 IPR033720 -
Stsc76g00004 488 ProSitePatterns Translational (tr)-type guanine nucleotide-binding (G) domain signature. 130 145 IPR031157 -
Stsc76g00004 488 CDD EFTU_III 389 483 - -
Stsc76g00004 488 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 87 315 IPR027417 -
Stsc76g00004 488 PRINTS GTP-binding elongation factor signature 137 145 IPR000795 GO:0003924|GO:0005525
Stsc76g00004 488 PRINTS GTP-binding elongation factor signature 210 219 IPR000795 GO:0003924|GO:0005525
Stsc76g00004 488 PRINTS GTP-binding elongation factor signature 157 167 IPR000795 GO:0003924|GO:0005525
Stsc76g00004 488 PRINTS GTP-binding elongation factor signature 173 184 IPR000795 GO:0003924|GO:0005525
Stsc76g00004 488 PRINTS GTP-binding elongation factor signature 93 106 IPR000795 GO:0003924|GO:0005525
Stsc76g00004 488 Pfam Elongation factor Tu GTP binding domain 89 290 IPR000795 GO:0003924|GO:0005525
Stsc76g00004 488 Gene3D Translation factors 295 423 - -
Stsc76g00004 488 FunFam Elongation factor Tu 427 487 - -
Stsc76g00004 488 FunFam Elongation factor Tu 80 292 - -
Stsc76g00004 488 Pfam Elongation factor Tu C-terminal domain 387 486 IPR004160 -
Stsc76g00004 488 SUPERFAMILY Translation proteins 294 390 IPR009000 -
Stsc76g00004 488 Gene3D - 81 292 IPR027417 -
Stsc76g00004 488 PANTHER ELONGATION FACTOR TU-RELATED 44 487 - -
Stsc76g00004 488 Pfam Elongation factor Tu domain 2 314 382 IPR004161 GO:0005525
Stsc76g00004 488 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 89 293 IPR000795 GO:0003924|GO:0005525
Stsc76g00004 488 NCBIfam small GTP-binding protein domain 92 224 IPR005225 GO:0005525
Stsc76g00004 488 CDD EF_Tu 90 292 IPR041709 -
Stsc76g00004 488 NCBIfam elongation factor Tu 81 488 IPR004541 GO:0003746|GO:0005525|GO:0006414
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc76g00004 Stsc-Chr76 19046 21589 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc76g00004 87 486 Eukaryotic Initiation Factors Gene Family AT5G60390 30.269 4.35e-47 167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc76g00004 K02358 - jre:109005546 783.097