Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc761g00001 ATGGAGAATAATAATGAGGAAATCCCATCAGCACCATCAACACCAGCCACACCAGGGACTCCAGGTGCACCTCTCTTCGGAGGCTTCAGATCCACCAACAATGGCGGTGGTCTCAGTAGAAAGTCACTCCTCAAGAATTGCAAGTGTTTCAGCGTTGAAGAATGGACCATTGAAGACGGTGCTTTACCCAAAGTCTCTTGCTCTTTGCCACCTCCTCCTGTTCCTCTTGCCAGAAAGGTAGGAGCTGAGTTCATCGGAACGTTCATTCTAATGTTCGCCGGAACGGCGGCGGCCATAGTAAACGAAAAGACAAACGGATCGGAGACTCTGATTGGTTGCGCCGCCGTGACCGGGCTCGCTGTTATGGTGATTATCCTCTCCACCGGACACATATCCGGTGCTCATCTCAACCCTGCCGTTACCATTTCCTTTGCCGCTCTGAAGCACTTTCCATGGAAGAACGTGCCGATGTATATTGGAGCACAAATATTGGCATCAGTGTGTGCGGCATTTGCACTGAAGGGAGTGTATCATCCATTTATGGGGGGTGGAGTGACAGTTCCTTCTTCAGGAGAATATGGCCAAGCTTTTGCTTTAGAATTCATCATCTCCTTCAATCTCATGTTTGTTGTCACTGCTGTTGCCACCGACACTAGAGCTGTTGGAGAGTTAGCGGGAATCGCGGTGGGAGCCACCGTCATGCTCAACATCCTTATAGCCGGGCCAGCGTCAGGGGGATCAATGAACCCAGTAAGAACATTGGGTCCAGCAATTGCAGCAAACAATTACAAAGCAATTTGGGTTTATATGACGGCTCCAATTCTTGGTGCACTTGCTGGTGCTGGTGCTTATTCTGCTGTTAAGCTTCCTGATGAAGATCAAAAACCTGAACTCAAGGCTCCTTCAAATCTTGGAAGCTTTAGAAGGTGA 930 0.4903 MENNNEEIPSAPSTPATPGTPGAPLFGGFRSTNNGGGLSRKSLLKNCKCFSVEEWTIEDGALPKVSCSLPPPPVPLARKVGAEFIGTFILMFAGTAAAIVNEKTNGSETLIGCAAVTGLAVMVIILSTGHISGAHLNPAVTISFAALKHFPWKNVPMYIGAQILASVCAAFALKGVYHPFMGGGVTVPSSGEYGQAFALEFIISFNLMFVVTAVATDTRAVGELAGIAVGATVMLNILIAGPASGGSMNPVRTLGPAIAANNYKAIWVYMTAPILGALAGAGAYSAVKLPDEDQKPELKAPSNLGSFRR 309
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc761g00001 309 CDD MIP 78 284 IPR000425 GO:0015267|GO:0016020|GO:0055085
Stsc761g00001 309 Pfam Major intrinsic protein 76 284 IPR000425 GO:0015267|GO:0016020|GO:0055085
Stsc761g00001 309 PANTHER AQUAPORIN NIP2-1 44 292 IPR034294 -
Stsc761g00001 309 FunFam Aquaporin NIP2-1 66 299 - -
Stsc761g00001 309 ProSitePatterns MIP family signature. 135 143 IPR022357 -
Stsc761g00001 309 PRINTS Major intrinsic protein family signature 117 141 IPR000425 GO:0015267|GO:0016020|GO:0055085
Stsc761g00001 309 PRINTS Major intrinsic protein family signature 154 173 IPR000425 GO:0015267|GO:0016020|GO:0055085
Stsc761g00001 309 PRINTS Major intrinsic protein family signature 267 287 IPR000425 GO:0015267|GO:0016020|GO:0055085
Stsc761g00001 309 PRINTS Major intrinsic protein family signature 78 97 IPR000425 GO:0015267|GO:0016020|GO:0055085
Stsc761g00001 309 PRINTS Major intrinsic protein family signature 199 217 IPR000425 GO:0015267|GO:0016020|GO:0055085
Stsc761g00001 309 PRINTS Major intrinsic protein family signature 230 252 IPR000425 GO:0015267|GO:0016020|GO:0055085
Stsc761g00001 309 MobiDBLite consensus disorder prediction 1 28 - -
Stsc761g00001 309 Gene3D Glycerol uptake facilitator protein. 73 298 IPR023271 -
Stsc761g00001 309 SUPERFAMILY Aquaporin-like 75 295 IPR023271 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc761g00001 Stsc-Chr761 8208 13142 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc761g00001 4 309 Major Intrinsic Protein MIP AT1G80760 76.452 1.02e-165 461
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc761g00001 K09874 - qsu:112009900 454.136