LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Stsc758g00001	ATGTCTATAGCTTCTGAAAACTCTGATACAGGTCCAAAGGAGAGGCTAATGGAATTGATGCATCGATCTGAAAACAAGTTTTGTGCTGATTGTGGTACTCCAGATCCAAAATGGGTATCTTCAAGTCTTGGAGTATTTATTTGCATCAAGTGTTCCGGCGTTCATCGAAGCTTAGGAGTCCACATAACGAAGGTTCTATCATTGAAACTCGACGAATGGACAGATGAGGAAGTTGATACATTGCTCAATTTTGGTGGAAATACAACACTAAACAAGAAGTATGAAGCTTGCCTCCCAAGTAGCATTAGAAAACCAGACCCAAATTCATCAATTGAGGATCGCTCTGATTATATAAGGCGAAAATATGAGTTGTTACAATTTACTAGTGATAACAAGAAGTCACAACAAACTACACCTGTAGCATCTCAAGCAAGTAATTCATCACCTCTTCAAAGTGATTCTTCTCCATTCAGTGATTCTCCTAGAGACAAAAAGCAACATGAAAAACATAAACATCGAATTGGGAATGCATTTCGACATATGGGAAGAAAAGATCTTGAGCATAAAACTCCAAAGAAAACCAACTCATTGGCAGGTATGGTTGAATTTGTTGGATTTATTAAGGTTAATGTGGTTAAAGGCACAAACTTGGTTATTCGAGATGTAGTGTCTAGTGATCCTTATGTTGTCCTTTCTTTGGGTGACCAATCAGTAAAAACACGTGTCATAAAGAAGAGTTTGAATCCAGTGTGGAATGAAAGTCTAATGTTGTCAATTCCGGAAAACATTCCTCCCCTTAAAGTGTGTGTATATGATAAGGACAAATTTTCAACTGATGATTTTATGGGTGAGGCTGAAATAGACATTGAACCTCTAGTTATAGCTACAAAAGACTATGAGGAGTCTAAAAGCAATGAGCATATGCAACAACATGGGGGATATGGTTCAACCACAGAAAACACTACTACTTGTGAAGATGATGCTAATGCCAATCACAAAGGAGAGATGAAACAACATTTCTCAATTAGGCTTCAAAATGTTGAAAGTGGTGTGCTAGAGATTGAGATTGAGTGTGTTCCTCTGACTCAATAA	1092	0.3755	MSIASENSDTGPKERLMELMHRSENKFCADCGTPDPKWVSSSLGVFICIKCSGVHRSLGVHITKVLSLKLDEWTDEEVDTLLNFGGNTTLNKKYEACLPSSIRKPDPNSSIEDRSDYIRRKYELLQFTSDNKKSQQTTPVASQASNSSPLQSDSSPFSDSPRDKKQHEKHKHRIGNAFRHMGRKDLEHKTPKKTNSLAGMVEFVGFIKVNVVKGTNLVIRDVVSSDPYVVLSLGDQSVKTRVIKKSLNPVWNESLMLSIPENIPPLKVCVYDKDKFSTDDFMGEAEIDIEPLVIATKDYEESKSNEHMQQHGGYGSTTENTTTCEDDANANHKGEMKQHFSIRLQNVESGVLEIEIECVPLTQ	363

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Stsc758g00001	363	CDD	ArfGap	16	122	-	-
	Stsc758g00001	363	PANTHER	ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD12	5	363	IPR044518	GO:0005096\|GO:0005543
	Stsc758g00001	363	SUPERFAMILY	ArfGap/RecO-like zinc finger	13	129	IPR037278	-
	Stsc758g00001	363	ProSiteProfiles	ARF GTPase-activating proteins domain profile.	13	136	IPR001164	GO:0005096
	Stsc758g00001	363	FunFam	stromal membrane-associated protein 1 isoform X1	2	133	-	-
	Stsc758g00001	363	SUPERFAMILY	C2 domain (Calcium/lipid-binding domain, CaLB)	202	296	IPR035892	-
	Stsc758g00001	363	PRINTS	HIV Rev interacting protein signature	25	44	IPR001164	GO:0005096
	Stsc758g00001	363	PRINTS	HIV Rev interacting protein signature	44	61	IPR001164	GO:0005096
	Stsc758g00001	363	PRINTS	HIV Rev interacting protein signature	65	86	IPR001164	GO:0005096
	Stsc758g00001	363	Pfam	C2 domain	207	293	IPR000008	-
	Stsc758g00001	363	ProSiteProfiles	C2 domain profile.	188	303	IPR000008	-
	Stsc758g00001	363	SMART	C2_3c	206	301	IPR000008	-
	Stsc758g00001	363	Gene3D	C2 domain	204	360	IPR035892	-
	Stsc758g00001	363	Gene3D	Arf GTPase activating protein	2	137	IPR038508	-
	Stsc758g00001	363	SMART	arf_gap_3	14	135	IPR001164	GO:0005096
	Stsc758g00001	363	MobiDBLite	consensus disorder prediction	128	157	-	-
	Stsc758g00001	363	MobiDBLite	consensus disorder prediction	128	184	-	-
	Stsc758g00001	363	Pfam	Putative GTPase activating protein for Arf	14	130	IPR001164	GO:0005096

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Stsc758g00001	Stsc-Chr758	2052	11222	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Stsc758g00001	13	363	C2H2 Transcription Factor Family	AT4G21160	44.444	2.40e-101	301

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Stsc758g00001	K12486		-	gmx:100789552	462.611