LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Stsc756g00001	ATGTTTGGATTTAGAAGAGCAGCACCAGCCCCAGCTGCAGCTCCAGCACCGAATCCTGCTTCCGGTTCAGAAACTGAACAGGAAAAGAAGACGAACCTTACTACAGATAAAAGAACTTCTTCAGAACCTGCCATTGCACCAAAATCCAAAGGAGGCTATTTTGACGATGAGGACGACGAGGATTATTGGGGGACAAAGCCTACTACAACCGCGGCGTCACGCACTTCAGCGGCTAACAAAGCAAAGTATAAAAATGATTTTAAGGATTCTGGAGGCCTAGAGAACCAAAGTGTTCAGGAATTGGAGGGCTATGCAGTGTACAAAGCTGAAGAAACCACAGAGAGTGTTAATAATTTGGTGAAGATTGCTGAGGACATAAGGGGTGATGCCACAAGGACCCTTGATATGTTGCATGAACAGGGTGAACAGATAACAAGAACTCACAACATGGTTGTTGAAACTGAAAGGGACTTGAGTCGGGGTGAGAAACTACTGAACAATCTTGGGGGCATGTTCTCTAAACCATGGAGGCCAAAGAAGACAAAGGAGATTATAGGCCCTAAAATCTCACTAGACAATACAACTAAAAAGGGTGAAGTGAATAAGCAAGATAGGGAGAAGTTGGGATTAGGTGCTAAGGGACGTTCTGGTTCTAACACACCCCATTCTGAACCAACCAATTCCTACCAACAAATAGAAAATGAGAAAGCAAAACAAGACGAAGGACTATCAGATCTCAGCAATATCTTAGACGATTTGAAGGGTATGGCAGTTGATATGGGAAGCGAACTTGACAGGCAAAATAAAGCTCTTGATCATCTTAGTGATGATGTGGATGAGTTGAACTCTCGAGTTAAAGGTGCCAACCAACGTGCACGCAAATTATTAGAAAAGTGA	897	0.4337	MFGFRRAAPAPAAAPAPNPASGSETEQEKKTNLTTDKRTSSEPAIAPKSKGGYFDDEDDEDYWGTKPTTTAASRTSAANKAKYKNDFKDSGGLENQSVQELEGYAVYKAEETTESVNNLVKIAEDIRGDATRTLDMLHEQGEQITRTHNMVVETERDLSRGEKLLNNLGGMFSKPWRPKKTKEIIGPKISLDNTTKKGEVNKQDREKLGLGAKGRSGSNTPHSEPTNSYQQIENEKAKQDEGLSDLSNILDDLKGMAVDMGSELDRQNKALDHLSDDVDELNSRVKGANQRARKLLEK	298

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Stsc756g00001	298	CDD	SNARE_SNAP25N_23N_29N_SEC9N	104	167	IPR044766	GO:0005484\|GO:0031201
	Stsc756g00001	298	PANTHER	SYNAPTOSOMAL ASSOCIATED PROTEIN	60	298	-	-
	Stsc756g00001	298	MobiDBLite	consensus disorder prediction	1	96	-	-
	Stsc756g00001	298	FunFam	SNAP25 homologous protein SNAP33	92	169	-	-
	Stsc756g00001	298	ProSiteProfiles	t-SNARE coiled-coil homology domain profile.	233	295	IPR000727	-
	Stsc756g00001	298	Gene3D	-	92	170	-	-
	Stsc756g00001	298	CDD	SNARE_Qc	236	294	-	-
	Stsc756g00001	298	MobiDBLite	consensus disorder prediction	66	80	-	-
	Stsc756g00001	298	Gene3D	-	217	297	-	-
	Stsc756g00001	298	SUPERFAMILY	SNARE fusion complex	228	296	-	-
	Stsc756g00001	298	FunFam	SNAP25 homologous protein SNAP33	230	297	-	-
	Stsc756g00001	298	SUPERFAMILY	SNARE fusion complex	96	167	-	-
	Stsc756g00001	298	Coils	Coil	264	298	-	-
	Stsc756g00001	298	MobiDBLite	consensus disorder prediction	195	211	-	-
	Stsc756g00001	298	SMART	tSNARE_6	228	295	IPR000727	-
	Stsc756g00001	298	SMART	tSNARE_6	99	168	IPR000727	-
	Stsc756g00001	298	MobiDBLite	consensus disorder prediction	187	240	-	-
	Stsc756g00001	298	MobiDBLite	consensus disorder prediction	216	233	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Stsc756g00001	Stsc-Chr756	5102	8215	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Stsc756g00001	224	293	SNARE and Associated Proteins	AT3G09740	41.429	2.89e-07	48.9

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Stsc756g00001	K18211		-	gmx:100806781	379.022