Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc74g00010 ATGGCCTCCACCTTCAGGGACCGCACCTCCGAGTTCCGGTCAGTGACGGAGGCCCTCAAGAAGAGGATCGGAGCGCCCACTCCACCACCCTTGCCGAACCAACCGGAAAATGCTCCCTCCTCCGCCAACTCTCTGGCTCCCCATTCCAGATCCGAATTCAACCGAAAGGCCTCTCGGATCGGTTTGGCCATCCACGATACCTCACAGAAGATCGCAAGGCTCGCCCAGCTGGCGAAGAAATCGTCGATTTTCAATGATCCGATTGTGGAGATACAGGAGCTGACGGCTGTGATTAAGAACGAGATCACGGCGCTGAACTCGGCTCTTTCGGATTTGCAGACGATTCAGAACATTGAAATTGCAGATGGCATGTACTCGGAGGATAGGGTTGTTCACTCCAATGCCGTTTGTGATGACTTGAAGAGCAGGCTCATGGGCGCCACAAAGAAACTCCAAGATGTCTTGACTACTAGAACAGAGAATATCAAGGCTCATGAGAATAGGAAGCAAATATTTTCCAAGAATGCGTCCAAAGAGAACCCTTTTCAGCATCACCCAAAGCCAGCCCATGAACCACCTCCATGGTCAAATTCATTAAATCCATCTGAAGCCTTGCAACAACAGTCAGCACTATCTTCAAATGGAGTACCAGTTGGCAATCAATTAAGACGGAGGTTAGCTGTGGACAACCCTCCAACCCCCCAAATGGAGATGGCTATGGTACAGCAGGTTGTTCCTCACCAAAATAATTATGCTCAAAGCCGTGCAACTGCACTGCACAGTGTTGAATCTACTATTACAGAACTTAGTGGGATCTTCACACATTTGGCCACAATGGTTGCCCAACAAGGGGAACTAGCCATCAGGATCGATGACAACATGGAAGAGACATTGGCAAATGTTGATGGAGCTCACAGTTCTTTATTGAGGCATCTTAACAGAATATCATCAAATAGGTGGCTTCTAATCAAGATATTTGCCATTTTGATATTTTTCCTAATGATCTTCATATTCTTTGTGGCTTAA 1026 0.4737 MASTFRDRTSEFRSVTEALKKRIGAPTPPPLPNQPENAPSSANSLAPHSRSEFNRKASRIGLAIHDTSQKIARLAQLAKKSSIFNDPIVEIQELTAVIKNEITALNSALSDLQTIQNIEIADGMYSEDRVVHSNAVCDDLKSRLMGATKKLQDVLTTRTENIKAHENRKQIFSKNASKENPFQHHPKPAHEPPPWSNSLNPSEALQQQSALSSNGVPVGNQLRRRLAVDNPPTPQMEMAMVQQVVPHQNNYAQSRATALHSVESTITELSGIFTHLATMVAQQGELAIRIDDNMEETLANVDGAHSSLLRHLNRISSNRWLLIKIFAILIFFLMIFIFFVA 341
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc74g00010 341 Pfam SNARE domain 286 337 IPR000727 -
Stsc74g00010 341 Gene3D - 48 304 - -
Stsc74g00010 341 PANTHER SYNTAXIN 50 334 IPR045242 -
Stsc74g00010 341 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 249 311 IPR000727 -
Stsc74g00010 341 MobiDBLite consensus disorder prediction 37 51 - -
Stsc74g00010 341 CDD SNARE_syntaxin5 252 327 - -
Stsc74g00010 341 Pfam Syntaxin-5 N-terminal, Sly1p-binding domain 4 22 IPR021538 -
Stsc74g00010 341 MobiDBLite consensus disorder prediction 1 51 - -
Stsc74g00010 341 SUPERFAMILY t-snare proteins 48 304 IPR010989 GO:0016020|GO:0016192
Stsc74g00010 341 ProSitePatterns Syntaxin / epimorphin family signature. 255 294 IPR006012 GO:0005484|GO:0006886|GO:0016020
Stsc74g00010 341 MobiDBLite consensus disorder prediction 160 218 - -
Stsc74g00010 341 MobiDBLite consensus disorder prediction 196 218 - -
Stsc74g00010 341 SMART tSNARE_6 244 311 IPR000727 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc74g00010 Stsc-Chr74 73368 77033 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc74g00010 1 341 SNARE and Associated Proteins AT5G05760 64.620 1.92e-145 412
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc74g00010 K08490 - gmx:100777383 488.804