Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc745g00005 ATGAGCGCCGGAGGAACAAGGTTGGCGAGAGCGGAGAGAGGGAAACACTGTGAGGGGTTGGGGCCGGGGGACTGGAAGCGGACGGAACCATACACTGTCTTCATTGATAATCTTCCAGAGGAGGTAAATAAAAGGGCTTTGTACAAGGAATTTGATAAAGATGGTTATATATTGGATGTTTTTATTTCAAAAAAGAGGAGGAGGAATTCAAACAGTGTGATTGCCTTCATCCGATACCATGCTTATGGTGGTGCACAGAGAGCCATAAATAGACTAAATGGCAAGCTCTGGCTTGAAGCGAAGCTTTATGTGGCTTTATCAAAGTATGGAAGGAGGTCTGATGTTGTGAAGCCTAAGATGAAACATGATATGCCGCCGACGAGGAGGGGGGTACCGAAAAATATGGCTTTACCCCAAAAAAGACGAGGAGTCGGATAA 438 0.4566 MSAGGTRLARAERGKHCEGLGPGDWKRTEPYTVFIDNLPEEVNKRALYKEFDKDGYILDVFISKKRRRNSNSVIAFIRYHAYGGAQRAINRLNGKLWLEAKLYVALSKYGRRSDVVKPKMKHDMPPTRRGVPKNMALPQKRRGVG 145
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc745g00005 145 CDD RRM_SF 33 104 - -
Stsc745g00005 145 SMART rrm1_1 32 105 IPR000504 GO:0003723
Stsc745g00005 145 MobiDBLite consensus disorder prediction 118 145 - -
Stsc745g00005 145 Gene3D - 6 115 IPR012677 -
Stsc745g00005 145 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 33 96 IPR000504 GO:0003723
Stsc745g00005 145 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 31 109 IPR000504 GO:0003723
Stsc745g00005 145 SUPERFAMILY RNA-binding domain, RBD 28 115 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc745g00005 Stsc-Chr745 21540 22082 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc745g00005 24 122 Eukaryotic Initiation Factors Gene Family AT2G36660 29.293 2.12e-06 44.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc745g00005 - K13126 csin:114287712 73.559