Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc743g00006 ATGAGTACAAAATCTGATTCAAGCAATATGCTTGGTGAATCTGATGCAATTGTGATCTCTGGGAAGATCATGATTGCTGTGGTGGTGTTACTCTCATTGTTCTTTGTTTTTGTCTTTGTGCTTCACCTCTGTTCCAAGTTTTCCATGTGGCGTGTTCAGCAAGAAACCTCCATTCCTTCCCCACACGGCTGCCGCCATCGCCGTCGCCGCCATCGCCACCTTGTATTCGCCTCAGGAGAAGATCCTATCACCCATGGAAACAAAAATGTTGGGCTTGACCCTTCAGTCCTTAAGTCCATACCTGTGTTGGTGTTCCAACCCCATGAATCCAAAGATGATTTAGAATGTGCTGTTTGCATCTCTGAGCTTGTTGAAGGTGAGAAGTTCAGAACTTTGCCACATTGCAATCATGGGTTCCATGTTGATTGCATTGACATGTGGTTCCAATCACATTCTACATGTCCCCTTTGTAGGACACTAGTTACTAATAGCACTCCAAGTGTTCGAGAGAATGTCACAGAGAACAGTGAGTCACCATCAGAAGCTGAAAACTCTGTTCATGTGAATAGCAATGATGAGTCTTCAAATTTTCCCACACATGTTTTAGTTTGGGGTGATCAAACTCAATTTTCTCACACAACTGAGGAGCCACATTGCTCATCATCATCATCTGGTTCATGTTCTTCAAGCAGCAATGGAAGAAACAATGGAGTTTTGGTGATTGATATACCAAATGATGAGGCCATTCCTGAAGAAGATAATGAGATGAAATCATCACCAATGGTAGCAAGATTGAGGTCAATCAAGAAGCTTCTAAGTAGGGACAAGAAGTCAACTAGTCCTTGTAGCCCCAATTCTGTTGATGTGGAACAAGCACAGAGTTAG 885 0.4294 MSTKSDSSNMLGESDAIVISGKIMIAVVVLLSLFFVFVFVLHLCSKFSMWRVQQETSIPSPHGCRHRRRRHRHLVFASGEDPITHGNKNVGLDPSVLKSIPVLVFQPHESKDDLECAVCISELVEGEKFRTLPHCNHGFHVDCIDMWFQSHSTCPLCRTLVTNSTPSVRENVTENSESPSEAENSVHVNSNDESSNFPTHVLVWGDQTQFSHTTEEPHCSSSSSGSCSSSSNGRNNGVLVIDIPNDEAIPEEDNEMKSSPMVARLRSIKKLLSRDKKSTSPCSPNSVDVEQAQS 294
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc743g00006 294 MobiDBLite consensus disorder prediction 271 294 - -
Stsc743g00006 294 FunFam RING-H2 finger protein ATL3 84 163 - -
Stsc743g00006 294 PANTHER RING-H2 FINGER PROTEIN ATL16 23 260 IPR044600 GO:0016567|GO:0016740
Stsc743g00006 294 MobiDBLite consensus disorder prediction 277 294 - -
Stsc743g00006 294 Pfam Ring finger domain 115 158 IPR001841 -
Stsc743g00006 294 SUPERFAMILY RING/U-box 96 167 - -
Stsc743g00006 294 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 80 163 IPR013083 -
Stsc743g00006 294 CDD RING-H2_EL5-like 115 158 - -
Stsc743g00006 294 SMART ring_2 116 157 IPR001841 -
Stsc743g00006 294 MobiDBLite consensus disorder prediction 212 234 - -
Stsc743g00006 294 ProSiteProfiles Zinc finger RING-type profile. 116 158 IPR001841 -
Stsc743g00006 294 MobiDBLite consensus disorder prediction 167 193 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc743g00006 Stsc-Chr743 24534 25573 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc743g00006 19 276 C3H Transcription Factor Family AT1G53820 39.322 1.02e-51 170
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc743g00006 - - gmx:100775523 260.766