Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc738g00006 ATGGCTCTTGCTTCAAGAAACAAAAAAATGCCATTACTTCCTACACCCACTACTTCTACTTCTTTCACTTTCATCACATCCCTGTTGCTACTCTTTCTTGGTGGCGTTAATGGCGGTTATTTCGTTGGATCGGAGTGTCTGAAAGTGGCACCTTCTGAATTTGTTGGGTCAGTGAGGGATGTGGTTGATGTGTTGGAAGGGGTTATGTCCATTCTAGCTGAGTTCGACGGTGGTGATGATTTTCGTGCCTCAAATGCAGTTTCTGACTGTGTCGATTTGCTTGACTTGTCATCTGATGAACTTGATTGGTCTGCTTCCGCCACTCAGAACCCCCAAGGGAAGCATAACAGTACTGGGAACTTAAGCTCAGATTTAAGAACATGGCTAAGTGCAACACTAGCGAATCCAGAAACATGCATGGATGGATTCGAAGGCACTGACAGCGTGGTTAAGGGTCTAGTTTCCACTGGTTTATTCCAAATGATCTCACTGGTTCAGAACCTTCTAACCCAAGTGAACCCCGTTCCAGATCACTCCTTGTCCACCACCACAAAACAATTCCCTGCATGGCTGAAAACAAGGGACAGGAAGAAGCTTCTGGAAGAAAACATCAACGCGGACGCGGTGGTGGCGGCCGATGGCAGCGGGAATTACACCACGATAATGGATGCTGTGAAAGATGCTCCAAATTATAGCATGAGAAGGTATGTGATATACATAAAGAAGGGTGTATATGATGAGAATGTTGAGATCAAGAAGAAGAAGTGGAATCTTATGATGATTGGAGATGGCATGGACAACACTCTTGTTACCGGTAACCGCAGTTTTGTTGATGGTTGGACCACTTTCCGCTCAGCCACTTTTGCTGTGAGTGGTAGAGGATTCATAGCAAGAGACATGAGTTTCCAGAACACAGCTGGGCCTGAGAAGCACCAAGCAGTAGCGCTAAGATCCGACTCGGACCTTAGCGTGTACTACCGGTGCGGTATCTTCGGTTACCAAGACAGCCTCTACGCCCATACAATGCGTCAATTTTACCGGGAATGCAAAATCACCGGCACCGTTGACTTCATCTTTGGCGACGCGGCTGCACTCTTCCAGAACTGCCTTATCTTGGCTAAGAAAGGCCTCCCTGATCAAAAGAACACCATCACTGCCCACGGCCGAAAAGAACCGACCGAGCCGACTGGATTCTCAATACAATTCTCTAATATAACAGCAGATTCAGACCTTGCAGCTTCGATTAACATTACTCACACGTACCTTGGTAGGCCATGGAAGCCATATTCAAGGACAATTGTGATGCAATCTTTCATAAGTGATGTGCTGAGGCCGGAAGGGTGGTTAGAGTGGAGTGGGAATGTTTCTTTGGACACGCTGTATTATGCTGAGTACATGAATCATGGGCCTGGATCTGGGCTTTCTAACCGCGTGAAATGGCCCGGGTACCATGTGATGAATGATTCTAGGCAGGCTAGTAACTTCACTGTCTCACAATTTATTGATGGGAATCTTTGGTTGCCTTCAACGGGTGTGGTTTTCACTGCTGGCTTGGGAGTTTAA 1563 0.4677 MALASRNKKMPLLPTPTTSTSFTFITSLLLLFLGGVNGGYFVGSECLKVAPSEFVGSVRDVVDVLEGVMSILAEFDGGDDFRASNAVSDCVDLLDLSSDELDWSASATQNPQGKHNSTGNLSSDLRTWLSATLANPETCMDGFEGTDSVVKGLVSTGLFQMISLVQNLLTQVNPVPDHSLSTTTKQFPAWLKTRDRKKLLEENINADAVVAADGSGNYTTIMDAVKDAPNYSMRRYVIYIKKGVYDENVEIKKKKWNLMMIGDGMDNTLVTGNRSFVDGWTTFRSATFAVSGRGFIARDMSFQNTAGPEKHQAVALRSDSDLSVYYRCGIFGYQDSLYAHTMRQFYRECKITGTVDFIFGDAAALFQNCLILAKKGLPDQKNTITAHGRKEPTEPTGFSIQFSNITADSDLAASINITHTYLGRPWKPYSRTIVMQSFISDVLRPEGWLEWSGNVSLDTLYYAEYMNHGPGSGLSNRVKWPGYHVMNDSRQASNFTVSQFIDGNLWLPSTGVVFTAGLGV 520
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc738g00006 520 Gene3D - 201 518 IPR012334 -
Stsc738g00006 520 Pfam Plant invertase/pectin methylesterase inhibitor 83 163 IPR006501 GO:0004857
Stsc738g00006 520 SMART PMEI_2 50 171 IPR006501 GO:0004857
Stsc738g00006 520 Gene3D Invertase/pectin methylesterase inhibitor family protein 56 174 IPR035513 -
Stsc738g00006 520 SUPERFAMILY Pectin lyase-like 205 517 IPR011050 -
Stsc738g00006 520 FunFam Pectinesterase 201 518 - -
Stsc738g00006 520 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 77 170 IPR035513 -
Stsc738g00006 520 Pfam Pectinesterase 207 504 IPR000070 GO:0030599|GO:0042545
Stsc738g00006 520 CDD PMEI-like_4 28 176 - -
Stsc738g00006 520 PANTHER PECTINESTERASE 81 508 - -
Stsc738g00006 520 ProSitePatterns Pectinesterase signature 2. 351 360 IPR033131 -
Stsc738g00006 520 ProSitePatterns Pectinesterase signature 1. 232 251 IPR018040 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc738g00006 Stsc-Chr738 18725 23081 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc738g00006 22 518 Carbohydrate Esterase AT3G43270 61.448 0.0 663
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc738g00006 K01051 - gmx:100777500 763.066