LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Stsc735g00005	ATGGAAACAAAACTCACTGCTACTCACCTCAGATTATTTCTTTGGTTCTTCTTCGTGAGCAGCCTCTTCATCACCTTCACCACAACAACAGCACAATCACCAAACTACGTTGGAGGTGACTGTGGCAACTCAACAGAACAATCTTTAACGAGTGGATACAAAACCAACCTCAACAGCCTACTAGCATGGTTTTCCTCTGATGCTGCCACAAGCAAAGGCTACAGCCATACCGCCATCGGAACCACCACATCCGATGCCATCTATGGCCTCTATAACTGCAGAGGCGACGTCACCGGCACCTTCTGCCAGTTTTGCATCTCCACTGCTGGGTCAGACATTCTTCGGCGTTGTCCAAACAGTTCATCGGCAGTGATATGGTATAACTACTGCATACTCAGATACTCCAATCATGACTTCATCGGTAACCTTACAATAAACCCAACTTGGATAACTCCTGGGACGAAGAACAGCACCAACAGCACAGGAGAACTCCAGATAGCGAAGACTTACATGCCAAATTTGATCAAGAATGCTACTGTGGAGAGCAACCTAATGATGTACGCAACGGGTGAGTTAAACTCTGGTGGCCCATTAGGGGAAAGGTATGGGTTGGTGCAGTGTACTTTGGACCTTACTCTTGAGGAGTGCAGTCATTGTTTGAATGCTATGTTGGACCAAGTTCCTACATGCTGTGCTGCAAAAGTTGAATGGATGGTTGGGTCCCCAAGCTGTTTGATGAAGTATGATAATTATATGTTCTACAATAGTCCAGGATCTTCTTTGCCTAATTCAGCCAAGAAGAGTAGAATTAAGACAAAAACGTTGATAATCATCATAGTGAGTGCGTTGGTCGCTGTGGCTCTACTAAGTTGCGGCTTCTACTTCTTATGGCGGCGGAAGAATCAATTAAATAATGATGCATTATTGTTAGAGAGCATTCCTATATCAATGTGTTATAACTCTCAAAGTCAAGGAGACGAAGATTCATTGAATGCTGACCTTCCTACAATTCCTCTAATTTGGATTCGACAAAGCACTGATAACTTTTCAGATTGTTGCAAATTAGGGGAAGGTGGATTTGGTCCTGTTTACAAGGGAAGTTTACAAGACGGGACTGAAGTTGCCATCAAAAGGCTCTCAAAAGCTTCCGGTCAGGGTTTAGTTGAGTTCATGAATGAAGTAATCTTCATTGCCAAACTGCAACATAGGAATCTTGTGAGATTATTGGGTTGTTGTGTTGAGAATAATGAAAAGCTACTTGTGTACGAGTACATGTCAAATTCTAGCCTTGCCTTTCACCTTTTTGACGAGGAGAGAAGAACAAAATTAAATTGGAGGTTACGATTAAATATTATTAATGGACTTGCAAGAGGAATTTTATATCTTCATGAAGATTCTAGACTCAGAGTAATTCATCGAGATTTGAAAGCTAGCAATGTTCTACTCGACGACGATATGAATCCAAAAATTTCAGATTTTGGATTGGCAAGAGCATTTGAAAAGGGTCAGAATCAAGAAAATACTACAAGAGTTATGGGCACATATGGATATATGGCTCCGGAATATGCTATGGAAGGGTTATACTCAGTAAAGTCTGACGTTTTTAGTTTTGGAGTTCTTCTACTAGAAATCATTAGCGGCAAAAGGAATGGTGGATTCTATCTTTCAGAATACGGTCAAAGTCTTCTTGTATATAGTTGGAGACTATGGTGTGAAGGAGAATGGTTGAAGCTGCTAGATCCTATACTAGAAAATACATACACAATAAATGAAGTTAGAAGGTGTATTCATATTGGTTTATTGTGTGTACAAGAAGATGCAGTAGATCGACCAACAATGTCCACAGTTGTTGTTATGCTAGCAAGTGAGACTATGACTCTTCCTAATCCTAACCATCCTGCATTTTCCGTTGGAAGAAAGATCAGAGAAGAAGAAAAAACGTCAAATAATGCCTCTAATGTAGATCCTTCAGTCAATATAGCATCGGTATCAAATATTTTACCTAGATAA	2010	0.4045	METKLTATHLRLFLWFFFVSSLFITFTTTTAQSPNYVGGDCGNSTEQSLTSGYKTNLNSLLAWFSSDAATSKGYSHTAIGTTTSDAIYGLYNCRGDVTGTFCQFCISTAGSDILRRCPNSSSAVIWYNYCILRYSNHDFIGNLTINPTWITPGTKNSTNSTGELQIAKTYMPNLIKNATVESNLMMYATGELNSGGPLGERYGLVQCTLDLTLEECSHCLNAMLDQVPTCCAAKVEWMVGSPSCLMKYDNYMFYNSPGSSLPNSAKKSRIKTKTLIIIIVSALVAVALLSCGFYFLWRRKNQLNNDALLLESIPISMCYNSQSQGDEDSLNADLPTIPLIWIRQSTDNFSDCCKLGEGGFGPVYKGSLQDGTEVAIKRLSKASGQGLVEFMNEVIFIAKLQHRNLVRLLGCCVENNEKLLVYEYMSNSSLAFHLFDEERRTKLNWRLRLNIINGLARGILYLHEDSRLRVIHRDLKASNVLLDDDMNPKISDFGLARAFEKGQNQENTTRVMGTYGYMAPEYAMEGLYSVKSDVFSFGVLLLEIISGKRNGGFYLSEYGQSLLVYSWRLWCEGEWLKLLDPILENTYTINEVRRCIHIGLLCVQEDAVDRPTMSTVVVMLASETMTLPNPNHPAFSVGRKIREEEKTSNNASNVDPSVNIASVSNILPR	669

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Stsc735g00005	669	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	470	482	IPR008271	GO:0004672\|GO:0006468
	Stsc735g00005	669	FunFam	Cysteine-rich receptor-like protein kinase 28	37	138	-	-
	Stsc735g00005	669	FunFam	Liguleless narrow1	425	628	-	-
	Stsc735g00005	669	CDD	STKc_IRAK	355	620	-	-
	Stsc735g00005	669	SMART	serkin_6	349	625	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Stsc735g00005	669	PANTHER	PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA	24	662	-	-
	Stsc735g00005	669	ProSiteProfiles	Gnk2-homologous domain profile.	35	139	IPR002902	-
	Stsc735g00005	669	Pfam	Protein tyrosine and serine/threonine kinase	354	617	IPR001245	GO:0004672\|GO:0006468
	Stsc735g00005	669	Gene3D	Phosphorylase Kinase; domain 1	314	424	-	-
	Stsc735g00005	669	FunFam	G-type lectin S-receptor-like serine/threonine-protein kinase	315	424	-	-
	Stsc735g00005	669	Pfam	Salt stress response/antifungal	41	136	IPR002902	-
	Stsc735g00005	669	Pfam	Salt stress response/antifungal	187	251	IPR002902	-
	Stsc735g00005	669	ProSiteProfiles	Gnk2-homologous domain profile.	145	253	IPR002902	-
	Stsc735g00005	669	SUPERFAMILY	Protein kinase-like (PK-like)	334	635	IPR011009	-
	Stsc735g00005	669	Gene3D	-	149	253	IPR038408	-
	Stsc735g00005	669	Gene3D	-	35	139	IPR038408	-
	Stsc735g00005	669	Gene3D	Transferase(Phosphotransferase) domain 1	425	630	-	-
	Stsc735g00005	669	ProSiteProfiles	Protein kinase domain profile.	349	635	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Stsc735g00005	669	Pfam	Domain of unknown function (DUF3403)	622	669	IPR021820	GO:0004674

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Stsc735g00005	Stsc-Chr735	20887	25442	Dispersed/Proximal

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Stsc735g00005	17	669	Receptor kinase-like Gene Family	AT4G05200	41.691	4.80e-171	503

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_DLSV	Stsc735g00005		PK_Tyr_Ser-Thr	3.4e-48	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Stsc735g00005	-		-	ahf:112718031	1016.14