Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc73561g00001 ATGGTTGGAATGGGTCAGAAGGATGCTTATGTGGGTGATGAAGCCCAGTCAAAAAGGGGTATCCTCACCTTGAAGTACCCTATTGAGCATGGAATTGTCAGTAACTGGGATGATATGGAAAAGATTTGGCATCACACATTTTACAATGAGCTTCGTGTTGCCCCTGAAGAACACCCTGTGCTTCTTACTGAGGCACCACTCAATCCCAAGGCCAACAGAGAGAAGATGACCCAAATTAT 239 0.4519 MVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQI 79
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc73561g00001 79 SUPERFAMILY Actin-like ATPase domain 2 79 IPR043129 -
Stsc73561g00001 79 CDD NBD_sugar-kinase_HSP70_actin 31 79 - -
Stsc73561g00001 79 FunFam Actin, alpha skeletal muscle 1 79 - -
Stsc73561g00001 79 Pfam Actin 7 79 IPR004000 -
Stsc73561g00001 79 Gene3D - 1 79 - -
Stsc73561g00001 79 PANTHER ACTIN 8 79 IPR004000 -
Stsc73561g00001 79 ProSitePatterns Actins signature 1. 10 20 IPR004001 -
Stsc73561g00001 79 ProSitePatterns Actins and actin-related proteins signature. 61 73 IPR020902 -
Stsc73561g00001 79 PRINTS Actin signature 72 79 IPR004000 -
Stsc73561g00001 79 PRINTS Actin signature 6 17 IPR004000 -
Stsc73561g00001 79 PRINTS Actin signature 18 40 IPR004000 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc73561g00001 Stsc-Chr73561 10 248 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc73561g00001 1 79 Cytoskeleton Gene Families AT3G12110 100.000 1.08e-54 171
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc73561g00001 K10355 - twl:119998694 168.703