Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc730g00001 ATGGAACAGAAAAGCATTCTGCTATCTGCAATAGGTGTTGGGGTTGGAGTGGGAGTGGGACTTGGATTGGCCTCTGGACAAGGAGTTGGAAAATGGGGAGCTTCCACTTATTCCTCCAACGCCATAACCGCTGAGAAGATAGAACAGGAAATGCTCCGACAAGTTGTTGATGGAAGAGAAAGCAATGTCACTTTTGATAAATTCCCTTATTACCTCAGTGAGCAGACAAGGGTTTTGCTGACTAGTGCGGCTTATGTCCATTTAAAGCATGCCGAGGTTTCCAAGTATACGCGAAATCTTGCCCCTGCAAGCCAAACTATTCTGCTTTCAGGGCCAGCAGAACTCTATCAACAGATGCTTGCAAAGGCTTTGGCACATTACTTTGAGGCCAAGTTGCTTCTTTTGGATTTAACCGACTTTTCACTCAAGATTCAAAGTAGATATGGCTCTGGCAATCAAGAATCTTCTTTCAAAAGATCCACCTCAGAGTCTACCTTGGAGCGATTATCTGACCTATTTGGGTCATTTTCAATCTTTCAACAGAGGGAGGAACCTAAAGCTTCAGGCAGAATACACAGGCAAAGCAGCGGAGTGGACCTTCAATCAATGGGGACTGAAGCATCTTCCAATCCTCCAAAGCTACGCAGGAACGCTTCTTCTTCGTCAAATATTAGCAGCCTTGCTATGCAAAGCAATCCTACAAATCCAGCTCCTCTGAAACGCACAACTAGCTGGTCTTTTGATGAAAAGCTTCTTATACAGTCTCTTTACAAGGTTCTGGTTTTTGTGTCTAAGACCTACCCTATTGTGTTATATCTGCGTGATGTTGATAAGTTGCTACATAGATCACAAAGGATATATAACTTGTTCCAAAAGATGTTGAAGAAACTATCTGGACCAATACTGATTCTTGGTTCCCAAGTTCTGGATTCCAGTAATGACTATGAAGAGGTAGATGACCGGCTTAATTCGCTCTTCCCATACACCATAGAAGTCAGGCCCCCAGACGATGAATCTCATCTTGTCAGCTGGAAGTCTCAATTGGAAGAGGATATGAAGAAGATACAAGTTCAAGATAACAAGAACCATATCATGGAAGTGCTTGCAGCCAATGACCTAGTTTGTGAAGACCTGGATTCCATCTGTGTTGCAGACACAATGGTTCTCAGTAACTATATAGAAGAGATTATCGTCTCAGCACTTTCTTACCACTTGATGAAAAGCAAAGACCTTGTGTACAGAAATGGGAAACTTGTGATTTCTTGCAATAGTTTGTCCCATGCCTTGGGTATATTCCACAAGGGAAAACTCATTGGAAGAAACGAATCGAAATTGGAAGATCAAGCGGTTAAATCTGAGGTCCGAAAAGTGGAAGAAAGTGTTAAAGAAGCAGAAGCAAAGTCTGAAGTTGCTGCTCCTGTAACAAAACCTGCAGCAGAAACATCAAAGGAAGAAGGGGAAAAATCAGTTGCAGCATCAAAAGCTGTTGAAGTTCCTCCTGATAATGAGTTTGAGAAGCGAATAAGGCCCGAGGTGATACCAGCAAATGAGATAGATGTGAAGTTCTCTGATATTGGTGCCTTAGATGAGACGAAAGAATCCCTGCAAGAACTGGTAATGCTTCCTCTTCGAAGGCCGGACCTCTTCACTGGAGGCCTTCTGAAGCCTTGCAGAGGGATATTGCTATTCGGACCTCCGGGCACCGGGAAGACAATGCTGGCGAAGGCGATTGCAAAGGAGGCCGGAGCAAGTTTCATCAATGTGTCCATGTCCACCATCACTTCGAAATGGTTCGGCGAAGACGAGAAGAACGTGCGTGCTTTATTCACACTTGCAGGGAAGGTGTCCCCAACCATTATATTCGTGGATGAGGTTGATAGCATGCTTGGGCAAAGGACCAGGGTTGGGGAGCATGAAGCCATGCGGAAGATCAAGAATGAATTTATGGCACATTGGGATGGGCTTATGACCAAACCAGGGGAGCGCATTCTTGTTCTTGCTGCAACTAACAGGCCATTTGATCTCGATGAAGCTATCATTAGGCGGTTCGAAAGGAGAATCATGGTGGGGCTACCATCTGTGGAGAATAGGGAGAAGATTCTGAGGACTTTACTGTCGAAAGAGAAGGTGGATGATGAACTTGACTTTAAGCAACTCGCAACTATGACAGAAGGATACACCGGGAGCGATCTAAAGAACCTGTGCACAACTGCCGCATATCGGCCTGTGAGAGAGCTTATTCAGCAAGAGAGGCTCAAGACTCTGGAGCAAAAGCAAGAAGCGGTTACAACAGAAGAACATGGGGAAGAGAAGCAAGAAAGAGTGATTAGCCTTAGGGCATTGAATATGCAGGACTTGAAGGAGGCTAAGACTCAGGTTGCTGCAAGCTTTGCGGCAGAGGGGGCTGGAATGAGCGAGTTGAAGCAGTGGAACGAGTTGTACGGAGAAGGCGGTTCAAGAAAGCAGCAACACTTGACTTACTTCCTCTGA 2490 0.4506 MEQKSILLSAIGVGVGVGVGLGLASGQGVGKWGASTYSSNAITAEKIEQEMLRQVVDGRESNVTFDKFPYYLSEQTRVLLTSAAYVHLKHAEVSKYTRNLAPASQTILLSGPAELYQQMLAKALAHYFEAKLLLLDLTDFSLKIQSRYGSGNQESSFKRSTSESTLERLSDLFGSFSIFQQREEPKASGRIHRQSSGVDLQSMGTEASSNPPKLRRNASSSSNISSLAMQSNPTNPAPLKRTTSWSFDEKLLIQSLYKVLVFVSKTYPIVLYLRDVDKLLHRSQRIYNLFQKMLKKLSGPILILGSQVLDSSNDYEEVDDRLNSLFPYTIEVRPPDDESHLVSWKSQLEEDMKKIQVQDNKNHIMEVLAANDLVCEDLDSICVADTMVLSNYIEEIIVSALSYHLMKSKDLVYRNGKLVISCNSLSHALGIFHKGKLIGRNESKLEDQAVKSEVRKVEESVKEAEAKSEVAAPVTKPAAETSKEEGEKSVAASKAVEVPPDNEFEKRIRPEVIPANEIDVKFSDIGALDETKESLQELVMLPLRRPDLFTGGLLKPCRGILLFGPPGTGKTMLAKAIAKEAGASFINVSMSTITSKWFGEDEKNVRALFTLAGKVSPTIIFVDEVDSMLGQRTRVGEHEAMRKIKNEFMAHWDGLMTKPGERILVLAATNRPFDLDEAIIRRFERRIMVGLPSVENREKILRTLLSKEKVDDELDFKQLATMTEGYTGSDLKNLCTTAAYRPVRELIQQERLKTLEQKQEAVTTEEHGEEKQERVISLRALNMQDLKEAKTQVAASFAAEGAGMSELKQWNELYGEGGSRKQQHLTYFL 829
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc730g00001 829 Coils Coil 447 467 - -
Stsc730g00001 829 MobiDBLite consensus disorder prediction 183 237 - -
Stsc730g00001 829 Pfam ATPase family associated with various cellular activities (AAA) 560 690 IPR003959 GO:0005524|GO:0016887
Stsc730g00001 829 FunFam p-loop nucleoside triphosphate hydrolase superfamily protein 519 694 - -
Stsc730g00001 829 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 101 354 IPR027417 -
Stsc730g00001 829 Gene3D - 692 791 - -
Stsc730g00001 829 Pfam AAA+ lid domain 714 754 IPR041569 -
Stsc730g00001 829 Gene3D - 519 796 IPR027417 -
Stsc730g00001 829 ProSitePatterns AAA-protein family signature. 663 682 IPR003960 GO:0005524|GO:0016887
Stsc730g00001 829 MobiDBLite consensus disorder prediction 466 496 - -
Stsc730g00001 829 PANTHER AAA ATPASE, PUTATIVE (AFU_ORTHOLOGUE AFUA_2G12920)-RELATED-RELATED 46 828 - -
Stsc730g00001 829 SMART AAA_5 103 336 IPR003593 GO:0016887
Stsc730g00001 829 SMART AAA_5 556 693 IPR003593 GO:0016887
Stsc730g00001 829 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 519 764 IPR027417 -
Stsc730g00001 829 MobiDBLite consensus disorder prediction 194 237 - -
Stsc730g00001 829 Gene3D - 46 358 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc730g00001 Stsc-Chr730 4014 8073 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc730g00001 520 782 Calmodulin-binding Proteins AT3G56690 36.090 3.29e-43 167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc730g00001 - - gmx:100807464 1335.86