Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc72414g00001 ATGGAAGGTTTCCAAGACACACTCTACGTCCAATCCCAACGCCAATTCTTCCGTGACTGCACCATCACAGGCACCGTTGACTTCATCTTTGGGGACGCAGTTGGAGTCTTCCAAAACTGCAAGCTCCTTGTCAAGAAGCCCATGTCTAACCAACAATGCATGGTCACAGCCGGTGGAAGAACCAAAGTTGACAGCCCAACTGCCCTTGTTTTCCAGAGCTGCTACTTCACTGGGGAGCCTCAACTTGCAAGCTTGAACCCCAAGATTGCTTACTTGGGTCGCCCATGGAGGACTTACTCCAAGGTGGTTATCATGGACTCCATCATTGATGATATCATTGTGCCTGAAGG 350 0.5 MEGFQDTLYVQSQRQFFRDCTITGTVDFIFGDAVGVFQNCKLLVKKPMSNQQCMVTAGGRTKVDSPTALVFQSCYFTGEPQLASLNPKIAYLGRPWRTYSKVVIMDSIIDDIIVPEG 117
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc72414g00001 117 ProSitePatterns Pectinesterase signature 2. 22 31 IPR033131 -
Stsc72414g00001 117 SUPERFAMILY Pectin lyase-like 2 117 IPR011050 -
Stsc72414g00001 117 Gene3D - 1 117 IPR012334 -
Stsc72414g00001 117 PANTHER PECTINESTERASE 1 117 - -
Stsc72414g00001 117 Pfam Pectinesterase 1 117 IPR000070 GO:0030599|GO:0042545
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc72414g00001 Stsc-Chr72414 14 363 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc72414g00001 1 117 Carbohydrate Esterase AT5G49180 55.833 4.90e-45 151
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc72414g00001 K01051 - gmx:100800194 205.297