Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc71g00012 ATGGTTTGGTCTAGTGATACAAGTGGGAAAGAGGTTTCTTCAATGGAATTGAAGAACACTGGGAATTTGGTTTTGCTTGGGAGTAATGATAATGTAGTGATGTGGCAGAGCTTCAATTACCCGACCGATGCATTGCTGCCATTGCACGAATTCAATGAGGGAATGAAACTTGTTAGTGAACCTGATTCTAAGAACTTTAGCTGTGTTCTTGAGATTGGTTCATCCGGTGATGTCACTCTTTCGGCCGTCTTACAAACTCTGCAGCCAATGCCATATTGGTCTATGCAGAGTGATAGCCGAAAAATTGTCAACAAAGGTGGCAATGAAGTGGCTTCAGCAACCATTGTTGAAAATTCTTGGAGATTCTATGACAAGAAAAAATCATTGTTGTGGGAATTTGTTTTTATAGATAATCAGGCTGTGAATGATACTTGGACTGCAGTGCTGTGTAGCTGTCTTTCTGTTCTAAGCTCTAGGCCTAGTTGCAAGCCTAGTTTTGCTTCTCCTTGTAACTCGAAAGCTGCAATTGAGCTAGTTAAAGCCGAGGATGGACTAAACTACTTTGAGCTTGGGTTTATTCAACCTTTTTCGAGAACTGATCTGATTGGTGGTTGCAAGAATTCCTGCAGCGAAAATTGTTTATGCCTCGCTATGTTCTTTCAAGAAAGTTCAAGAAATTGTTTTCTGTTGGATCGGATCAGAAGCTTTGAGAAAACTAATAAAGATTTCGATTTTCTCTCTTACATTAAGGTCTCTAGCATTGGTGGCACTGGTAAGGGTGTAGTGGAAATGAAAAGTGATATCCCGGCCGCCAAGCCTTCGTCCCAAGAGAATTCAGAAGGTGGCAATTTCTTGGAGAACTTAACAGGCATGCCACTTCTTGCTTACGAGTACATGGCTAATGGCTCATTGGATAAGTGGATATTGAATCAAAACAAAGCAGAATTTTCATTGGATTGGGATACAAGGTTCAATGTAGCGCTTGGAACTGCGAAAGGACTCACATACCTCCACAAAGATTGCGACTCGAAGATTGTTCATTGTAACATCAAACCAGAAAATGTGCTTCTAGATGAGAAATTCAATGCAAAAGTTACGGATTTCGGTCTAGCCAAGCTCATAACACAGTTAATCGGCGGTCGGAAAAACTATGATCCGGCTGAAAGCTCAGAGAAATCTTCTTTCCCATATTTTACATTCAAGATGATGGAAGAAGGGAAACTTAGAGACATTATTGATTCAGATTTGAAACCATATGAAGATGCTGAGAGGGTACAAGTTGCAATCAAAGTTGCATTGTGGTGCATACAAGAAGACATGAATCCAAGGCCTTCAATGACCAAAGTTGTGCAAATGCTTGAAGGTCTTTGCACGCACCCTACCACAGATTCAGGTGATGATGAAATGAACTTAAACGGATCCGTGGCATGGTGCCACGGATTTAGGTTCGTGGAGAATTCAATGTGCCACGCCTATAAATACCAAGTGGTGGTCCCTGGTGAGGATGTGCGGCGAGCTAAGATGGCGGAGGCGGAGGACGGTGAGCGGGACACGAGGCGACGAAGCAAAGCGAGCCGGTTGGGAATAGGTGGATTATGCAATTATTAA 1608 0.4241 MVWSSDTSGKEVSSMELKNTGNLVLLGSNDNVVMWQSFNYPTDALLPLHEFNEGMKLVSEPDSKNFSCVLEIGSSGDVTLSAVLQTLQPMPYWSMQSDSRKIVNKGGNEVASATIVENSWRFYDKKKSLLWEFVFIDNQAVNDTWTAVLCSCLSVLSSRPSCKPSFASPCNSKAAIELVKAEDGLNYFELGFIQPFSRTDLIGGCKNSCSENCLCLAMFFQESSRNCFLLDRIRSFEKTNKDFDFLSYIKVSSIGGTGKGVVEMKSDIPAAKPSSQENSEGGNFLENLTGMPLLAYEYMANGSLDKWILNQNKAEFSLDWDTRFNVALGTAKGLTYLHKDCDSKIVHCNIKPENVLLDEKFNAKVTDFGLAKLITQLIGGRKNYDPAESSEKSSFPYFTFKMMEEGKLRDIIDSDLKPYEDAERVQVAIKVALWCIQEDMNPRPSMTKVVQMLEGLCTHPTTDSGDDEMNLNGSVAWCHGFRFVENSMCHAYKYQVVVPGEDVRRAKMAEAEDGERDTRRRSKASRLGIGGLCNY 535
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc71g00012 535 Gene3D - 1 81 IPR036426 -
Stsc71g00012 535 ProSiteProfiles Protein kinase domain profile. 179 535 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc71g00012 535 ProSiteProfiles Bulb-type lectin domain profile. 1 71 IPR001480 -
Stsc71g00012 535 SUPERFAMILY Protein kinase-like (PK-like) 291 454 IPR011009 -
Stsc71g00012 535 SUPERFAMILY alpha-D-mannose-specific plant lectins 2 59 IPR036426 -
Stsc71g00012 535 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD2-5 2 261 - -
Stsc71g00012 535 FunFam Protein kinase superfamily protein 299 373 - -
Stsc71g00012 535 Pfam D-mannose binding lectin 2 51 IPR001480 -
Stsc71g00012 535 Pfam Protein kinase domain 294 376 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc71g00012 535 Gene3D Transferase(Phosphotransferase) domain 1 376 475 - -
Stsc71g00012 535 Gene3D Transferase(Phosphotransferase) domain 1 299 375 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc71g00012 Stsc-Chr71 83636 89046 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc71g00012 247 455 Receptor kinase-like Gene Family AT5G20050 33.210 4.90e-32 126
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_SD-2b Stsc71g00012 Pkinase 7.3e-15 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc71g00012 - - shis:125192036 421.394