Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc719g00004 ATGGGTGGCCACATGAGATCTCACTTAGTCAAATTGCCAATACCTCCCAAGCCTGACCCTGAGAATCAAGCACTTGACAACTCTACTAAGTTAACCAATCATGCAACTGAAGCTCCTTCCTCACTGAATATCCATTCCAAAAGGAAACCAGCACAAAGATTTCGATCTTTGAAACAAAGCTTCTTAGCCTTTTTGTCAAACTCAAACCAAAAAAATAGATCTCCGCCTTACCCTAAAAACCCAACCCGCAAAAGATCCAACAGCCGCCGACAATTTATTATAGTGGGTGAGAAAAGATCTGAACCGAAACACGAGAGTTCAACAACATCTGAAACTCTTCCTGCAGAAGAAGCAGCAGCTAGGTCCTTGATATTGCTTTCCAAAGATAATTGGCCGGCAAGAAAAGAGATCAAGACACAAGAAATGGAAGGAGCCAACCAAATGTTGACAAAAGATAATGAAAACAATAAAGATGCCTCACTTGTTCAAACTCCCACTCAAGTTAAATTCAAGTGTTCTGATAATAAAGTGGTCGAGTGCCCATTTTGCTCCAAGATGTTCAAATCTTCTCAAGCACTCGGTGGGCACAAAAGGATACACTCAAACAATCCTATGGTTGCTAATGCTCGCAATAAGTTTGTAGACAAGTCGCTAGACCCTAAGGTTCCAGCTTTTAGAAATGATGTCAATGAAGAG 696 0.4109 MGGHMRSHLVKLPIPPKPDPENQALDNSTKLTNHATEAPSSLNIHSKRKPAQRFRSLKQSFLAFLSNSNQKNRSPPYPKNPTRKRSNSRRQFIIVGEKRSEPKHESSTTSETLPAEEAAARSLILLSKDNWPARKEIKTQEMEGANQMLTKDNENNKDASLVQTPTQVKFKCSDNKVVECPFCSKMFKSSQALGGHKRIHSNNPMVANARNKFVDKSLDPKVPAFRNDVNEE 232
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc719g00004 232 Pfam C2H2-type zinc finger 179 200 - -
Stsc719g00004 232 Gene3D Classic Zinc Finger 153 225 - -
Stsc719g00004 232 MobiDBLite consensus disorder prediction 1 116 - -
Stsc719g00004 232 ProSitePatterns Zinc finger C2H2 type domain signature. 180 200 IPR013087 -
Stsc719g00004 232 SUPERFAMILY beta-beta-alpha zinc fingers 175 203 IPR036236 -
Stsc719g00004 232 MobiDBLite consensus disorder prediction 90 106 - -
Stsc719g00004 232 MobiDBLite consensus disorder prediction 59 82 - -
Stsc719g00004 232 PANTHER ZINC FINGER PROTEIN ZAT1-RELATED 1 173 IPR044303 GO:0006355
Stsc719g00004 232 ProSiteProfiles Zinc finger C2H2 type domain profile. 178 205 IPR013087 -
Stsc719g00004 232 MobiDBLite consensus disorder prediction 22 47 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc719g00004 Stsc-Chr719 23788 24483 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc719g00004 1 224 C2H2 Transcription Factor Family AT1G02030 27.519 7.20e-11 58.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Stsc719g00004 zf-C2H2_6 7e-06 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc719g00004 - - adu:107495627 343.584