Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc71933g00001 ATGCCGAATGGTTCTCTAGATAAGTATACATTTTCCAAAGAAAAAAGTGCATCTCTAACTTCCGAAAAGATGTTTGAGATATCTGTGGGAGTGGCACGCGGCATGGCTTATTTGCATGAAGGATGTGACATGCAGATTTTGCATTTTGACATCAAGCCTCACAACATCCTTCTTGATGAGAACTTCATTCCAAAGGTCTCAGACTTTGGTCTTGCAAAGCTATATCCTCTTGATAATAGTATTGTATCTTTGACTGCGGCAAGAGGAACCATTGGTTACATGGCTCCAGAACTGTTCTATCAGAATATTGGAGCA 315 0.4032 MPNGSLDKYTFSKEKSASLTSEKMFEISVGVARGMAYLHEGCDMQILHFDIKPHNILLDENFIPKVSDFGLAKLYPLDNSIVSLTAARGTIGYMAPELFYQNIGA 105
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc71933g00001 105 SUPERFAMILY Protein kinase-like (PK-like) 1 102 IPR011009 -
Stsc71933g00001 105 FunFam Os07g0541700 protein 1 90 - -
Stsc71933g00001 105 Gene3D Transferase(Phosphotransferase) domain 1 1 103 - -
Stsc71933g00001 105 ProSitePatterns Serine/Threonine protein kinases active-site signature. 46 58 IPR008271 GO:0004672|GO:0006468
Stsc71933g00001 105 Pfam Protein kinase domain 2 99 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc71933g00001 105 PANTHER RUST RESISTANCE KINASE LR10-RELATED 1 104 IPR045874 GO:0004672
Stsc71933g00001 105 ProSiteProfiles Protein kinase domain profile. 1 105 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc71933g00001 Stsc-Chr71933 106 420 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc71933g00001 1 105 Receptor kinase-like Gene Family AT5G38280 55.238 1.32e-36 128
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Stsc71933g00001 Pkinase 7.9e-20 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc71933g00001 - - adu:110273082 193.741