Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc70g00011 ATGGATGTTCACCATGAAACACTGATAATCAACAATGATTATGAGGTGCATGATTTCACTGAGGACCCCAACTTTGATCAGTTCATCAATTTGATTAGAGGGGAGAATAATAATGGAGATGATGCCATGTTCTTAAACTATGGCTCAGACATTATCATCAATGATTGCCTCCTTGATGATACTCAGAATCATCAGCTACTTCTTCACCAAATTGATGAGATTCATCAGAGCAATAATAGTGAAGTGATGATGAATAATGTGTATGGTGATGATCCTAATAACCCTACAACTCTTATTAGCTCCTTCTCTTGTTTTGATGAAGGGGTGGTTAACAATAGAGAAAATGAAGAAGGAGAGTATTCCTCTGCAACCACAACTGCAACTGATGAGGCTAATACTCTGCTCAGTGTTAAACCAAGGCTGAAAACTGATAGGTCCAAGACTCTCATCTCCGAGAGGAGGAGGAGAAGCCGAATGAAGGAGAAGCTTTATGCACTCCGCGCTTTGGTCCCTAACATAACAAAAATGGATAAGGCATCAATCATTGGAGATGCAGTATCTTACGTGCATGAGCTTCAAGCACAAGCTAAGAAGCTCAAGGGTGAGGTTGCAGGACTTGAAGCATCTCTCTTTGTGTCAGAAAATTACAAAGCATCATTTGATGATAACCCCATAAAAACTGTTCAAGTCACACACAATAGCCACCCAATCATCAACAAGAAGATAGTGCAGATAGAAATGGTTCAAGTGGAAGAAAGAGGGTATTATGTGAAGATAGTGTGCAACAAAGGAGGAGGAGGAATTGCTGCATCACTCTACAGGGCTTTGGAGTCTCTTGTGGGTTTCAGTGTTCGGAATTCAAACATGGAAACTGTTTGTGACACTATACTACTTACATTTACATTGAATGTTAAAGCCTTTGAACCAGAAGTTAACCTGCCAAACTTGAAGCTATGGGTGACAGGAGCTCTTCTCAACCAAGGCTTTGAATTCATGCCAAATTTTCATTCTTGA 1014 0.4014 MDVHHETLIINNDYEVHDFTEDPNFDQFINLIRGENNNGDDAMFLNYGSDIIINDCLLDDTQNHQLLLHQIDEIHQSNNSEVMMNNVYGDDPNNPTTLISSFSCFDEGVVNNRENEEGEYSSATTTATDEANTLLSVKPRLKTDRSKTLISERRRRSRMKEKLYALRALVPNITKMDKASIIGDAVSYVHELQAQAKKLKGEVAGLEASLFVSENYKASFDDNPIKTVQVTHNSHPIINKKIVQIEMVQVEERGYYVKIVCNKGGGGIAASLYRALESLVGFSVRNSNMETVCDTILLTFTLNVKAFEPEVNLPNLKLWVTGALLNQGFEFMPNFHS 337
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc70g00011 337 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 143 192 IPR011598 GO:0046983
Stsc70g00011 337 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 10 327 - -
Stsc70g00011 337 Gene3D - 141 215 IPR036638 GO:0046983
Stsc70g00011 337 Pfam Helix-loop-helix DNA-binding domain 150 193 IPR011598 GO:0046983
Stsc70g00011 337 FunFam Basic helix-loop-helix (BHLH) DNA-binding superfamily protein 139 209 - -
Stsc70g00011 337 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 144 211 IPR036638 GO:0046983
Stsc70g00011 337 Coils Coil 189 209 - -
Stsc70g00011 337 SMART finulus 149 198 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc70g00011 Stsc-Chr70 78609 79931 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc70g00011 12 329 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G28160 48.466 4.23e-92 275
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Stsc70g00011 HLH 3.3e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc70g00011 K26214 - gmx:100805451 345.51