Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc70g00008 ATGATTTCATCAAGAAGTCTCCAGCAGCATCAAGGGATGATGATGATGCAGATGTTCCCACCTCCTGGGACCGAGGATTTGGTGTCACAATCTGTGCAAATTGTTAATAACAATTCTTCTTCTTCCTCAACTACTACTGCTGCTGGTGGTTCTTCTTCATCTTCACACTCAAGCTCCCTCCTCTTCAATCTCTCTGTTCTGAGGGACAAGCTCAATCAGGTTCAGACCCTTGTTGGTGTTATTCTCTCCCCAGATCAGCAGAACCTACATCAGGACTCAACAACAACAACTTCCATAGCTGTTTCAAGCATCAACTCCACAATCCAAGAAATTATTGTCACTGCAACTTCAATGATGTTCACCTGCCAACAGATCGCTCTCACTTTCCCTCCTCCTCCTCCAGGTACCATTGCTACTTGCGCCAACAACAACAACCAATTGCACCAACAACATCAAAGGTATAATAATCACTCCAATAATTATCCCGATAATAATAATAATAATATTAGAGGCCATGGCCAACAAGGTTTCTTTTCTAGTACTACTACTGATTCTGAGTCACTTGATAATTGGTTTGGTGAAGGCTATAACAATAGTGGTGTTGATTGTAATAAGGTTAATAATAATAATAATAATCATAATAATGATGATGATGATCCAAGTGTTGATGAAATTAGTGATAACAAAGAAGGGGTTATTGTTTCATCACCAAAGAGCTTTGATATAATTGAATTGGATGCTGGGGATTTGTTGGCAAAGTACACACATTACTGCAGTGTTTGTGGGAAAGGCTTCAAGCGAGATGCCAATTTAAGAATGCACATGAGAGCTCATGGTGATGAATACAAAACCAGTGCCGCATTGAGTAACCCTTTGAAGAATAAGCACAATAATAAACATGGCAACAATGGTGGTGGTGATTGTTTGGTGAATAATAATAATAATAATGAAGAACAAGTAGTAATGAAGCCGAAGAAATATTCGTGCCCTCAAGAAGGGTGTAGGTGGAACCAGAAGCACCCAAAGTTTCAGCCATTGAAGTCAATGATTTGTGCAAAGAATCACTACAAGAGAAGCCATTGTCCAAAGATGTACGTGTGCAAGAGGTGTAACCAGAAGCAATTCTCTGTGCTATCTGATCTGAGAACACATGAGAAGCACTGTGGGGATATCAAGTGGCAGTGTTCTTGTGGCACCACTTTTTCAAGGAAAGACAAGCTTATGGGGCATGTTGCTTTGTTTGTTGGCCACCGCGCCCTTCCCATTGCCTTCGACCAATACACTGCATGCCTAAGGCCCACAAGCATTAACCATCGGATCCTCACGAGATCCGATCATATCTACATCGATCTCGTACGGATTTACCCCCTAAATAATAGGAACCACCACGAGTATATAAAGAGGAGATCAGCTCTCCTCCAGCCTTCTTCCATGGCACCTCCGGTCACTCCGGAAATCCCAAAACCCCTTGAAGAACCCGAAGGCAAATCCACAACAAGTGAACCTCGATCTCAATGCAACCGCAAACGAACTTCGGAAAGAGAATACGGAACTCAAGAACGTCGCCCAAAACTTGAGAGCACGGCGCGACGTTCACCTCTCCGGCGTAGCGAACGTTCTAGGTCGCGCTCCCCAACCCAAAGACGTCCGCGGTCTCCCCCCCGACGGAGGCGTCACCAGGACAACTCCGAAAGCCCGGATTCGTCCTCTGACGAATCCCATGAGGGGAGGCGAAGACGCCCTCGCTGTTACAAGAGGATGAGAAATCGTGAAGGAACACCACCCGTCGATGGATACACTCCTCTTTCGAGTCGGATCCTCAAAGTCCAACTTCCCAATGGCTTTGTAAAGCCGACAGATATGAAATACGACAGATCGACAGATCCTTACGTTCACCTCAACGACTTCGAACACCGGATGATTTGTGACGGAGCCATAGATGAAGTCAAGTGCCGAGCCTTTCCGGTTGCCTTGACTTGGTCGGCCGCCCAATGGTTCACGTCCTTACCGGCGTGTTCAATCTCAACTTACTCTGAAATAAGAGAGTTATTCCTCGACGAGTTCACGATGAGCATAGACAACAAGAAGCACCCGATCAACCTCCTTGCTGTGGTCCAAAGGCCTAACGAGACCACGAGGAAGTACATCTAG 2151 0.4533 MISSRSLQQHQGMMMMQMFPPPGTEDLVSQSVQIVNNNSSSSSTTTAAGGSSSSSHSSSLLFNLSVLRDKLNQVQTLVGVILSPDQQNLHQDSTTTTSIAVSSINSTIQEIIVTATSMMFTCQQIALTFPPPPPGTIATCANNNNQLHQQHQRYNNHSNNYPDNNNNNIRGHGQQGFFSSTTTDSESLDNWFGEGYNNSGVDCNKVNNNNNNHNNDDDDPSVDEISDNKEGVIVSSPKSFDIIELDAGDLLAKYTHYCSVCGKGFKRDANLRMHMRAHGDEYKTSAALSNPLKNKHNNKHGNNGGGDCLVNNNNNNEEQVVMKPKKYSCPQEGCRWNQKHPKFQPLKSMICAKNHYKRSHCPKMYVCKRCNQKQFSVLSDLRTHEKHCGDIKWQCSCGTTFSRKDKLMGHVALFVGHRALPIAFDQYTACLRPTSINHRILTRSDHIYIDLVRIYPLNNRNHHEYIKRRSALLQPSSMAPPVTPEIPKPLEEPEGKSTTSEPRSQCNRKRTSEREYGTQERRPKLESTARRSPLRRSERSRSRSPTQRRPRSPPRRRRHQDNSESPDSSSDESHEGRRRRPRCYKRMRNREGTPPVDGYTPLSSRILKVQLPNGFVKPTDMKYDRSTDPYVHLNDFEHRMICDGAIDEVKCRAFPVALTWSAAQWFTSLPACSISTYSEIRELFLDEFTMSIDNKKHPINLLAVVQRPNETTRKYI 716
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc70g00008 716 MobiDBLite consensus disorder prediction 476 601 - -
Stsc70g00008 716 MobiDBLite consensus disorder prediction 37 56 - -
Stsc70g00008 716 FunFam Zinc finger protein 574 255 280 - -
Stsc70g00008 716 Gene3D Classic Zinc Finger 363 413 - -
Stsc70g00008 716 Pfam Zinc finger, C2H2 type 256 278 IPR013087 -
Stsc70g00008 716 PANTHER PROTEIN SENSITIVE TO PROTON RHIZOTOXICITY 1 39 421 IPR044300 GO:0010044|GO:0010447
Stsc70g00008 716 SMART c2h2final6 256 278 IPR013087 -
Stsc70g00008 716 SMART c2h2final6 327 360 IPR013087 -
Stsc70g00008 716 SMART c2h2final6 365 387 IPR013087 -
Stsc70g00008 716 MobiDBLite consensus disorder prediction 154 183 - -
Stsc70g00008 716 ProSiteProfiles Zinc finger C2H2 type domain profile. 256 283 IPR013087 -
Stsc70g00008 716 SUPERFAMILY beta-beta-alpha zinc fingers 254 281 IPR036236 -
Stsc70g00008 716 ProSitePatterns Zinc finger C2H2 type domain signature. 258 278 IPR013087 -
Stsc70g00008 716 Gene3D Classic Zinc Finger 240 329 - -
Stsc70g00008 716 MobiDBLite consensus disorder prediction 506 545 - -
Stsc70g00008 716 MobiDBLite consensus disorder prediction 557 578 - -
Stsc70g00008 716 MobiDBLite consensus disorder prediction 202 225 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc70g00008 Stsc-Chr70 39937 43700 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc70g00008 236 417 C2H2 Transcription Factor Family AT5G22890 68.681 3.97e-85 271
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Stsc70g00008 zf-C2H2 0.00031 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc70g00008 - - gsj:114375424 382.874