Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc70g00003 ATGAGGAACCCATCCATGAAGAAGAGCCTCGTGTGGTTGTGGATGAAATTNNNNNNNNNNAAGGTTTCTTTTGAGGAACAATGTGCTGATGGGGTAACAACACCAGTTTTGGTTTTAGGTGACGATGTTAAGGGGAAGAGGGTTGTTGCTGTGGAGAAGCCTATGAGGAGGTTTACTAGGTCGGCATTGAAGCAAAAAGCTGAGGAAACCAGTATGGTGAATGACGGGGAAGGTGGTGCTATTGTTGTTGCAGCTGCTGGTGATAATGTTCAGAATGAAACTGAGGTTGTGGCTGAAACTGATGCTTCACCAGTGAGCACAACTCCAACTCTGGCAAAGGGATCAAGGAGGGGCATGAAGAGGTTCCCTACCAAGCTGAAGGACCTTCTTGCCACCGGGATTATTGAGGGACTGCAAGTGAAGTATGTTAGGGGAAAGGCACGGAGGCCAGGAGAAGCAGGGCTTCAAGGAGTGATTCGTGACTTAGGGGTTTTGTGCTATTGTCCAGATTGTAAAGGGGATGAGGTTGTCTCACCTACTGTGTTTGAGCTGCATGCTGGTAGTGCCAACAAACGCCCTCCCGAGTATATGTACCTTGAGAATGGGAATACTCTCCGCGATGTCATGAATGCATGCTGGAATTTTCCTTTGGACACCATGGAAGAAGCTGTCCAAAAGGTCCTTGGTGATTTTACTTTGAAGAAGTCTAACATCTGTTTTAGTTGCAGAGGTGGCGATGGTTTGTCAAGACTATTGCTCTGTGATTCATGCATGCAGTTGAAAGACTCTCAAACTAGCCCTCATCAAACAAAAAGTGTTGCTCAAATTACCTTGACTAGCAATAGAAGTGTTGCCCAAACTCCTTTGACTAGTGCGAAAAGTGTTTCTCAAACTGCCGTGATAGACACTAAAACTGTTTCTAAAACTGCCGTGATTGACACTAAAACTGATTCTCAAACTACCATGACTATCGCTAAAAGTGTTTCACCTGCAGTTCAACCCAGATCACCAGAACTACAATCGGAATCAGCGCTAGTTGCAGTTCCGAAGTCCTTAAACAATGGGATGAAGCATAGCACATCTCATGGCAGGAGTCAGGGAAAAATTACTAGAAAGGACCTACGCTTGCATAAGTTGGTATTCGAGGAAGATGTGCTGGCAGATGGAACTGAACTAACTTACTATTCTCATGGAGAGAAAAAGCTGGTAGGATACAAGAAGGGATATGGAATTTTTTGTACCTGCTGCAAATCTGAGGTCAGTGCGTCTCAGTTTGAAGCCCATGCTGGCTTGGCATCTCGACGCAAGCCTTACTTACACATATACACACCTGATGGAGTTTCACTGCATGATTTGTCTATCTCTTTATCAAAAGATCGGAGGTTTGCTATCAGTGAAAATGATGACCTCTGCAGCATTTGTGAAGATGGAGGGGATCTTTTGTGTTGTGATGGATGCCCAAGAGCTTTTCACATAGATTGTGTTCCTCTTCCATGTATTCCGAGTGGCACATGGTATTGTAAGTATTGCCAGAATCTTTACGGTGAGCATAATGCAAATGCGCAAGCAAAAGACCGCAGATGCGTTCGTGTTGTTAAAACTAACAAGGTTGACCATGGTGGATGTGCCTTATGCAGAAAGCACTATTTCAGTAAATGTTTTAGTCCTCGGACAGTGATCATTTGTGATCAGTGTGAAAAAGAATATCATGTAGGGTGCTTGAAGGAAAATAACATACAAAACCTCGAGGAATTACCTGAAGGGAATTGGTTTTGTGATACAAGTTGCAATCAAATTCATTCTGCTCTTGTGAATTTGGTAGCTAATGGAGAGAATAGCCTCCCAGATTCCCTTTTAAGTTTGATTAAAAGGAAACATGAAGAGAAAGGTTTAGATGCTGGGGATGGTCTCGATATTAAATGGAGGCTTCTGAACTGGAAGCTGGCTTCTTCTGTTGACACTAGAAAATTGCTCTCAAAGGCTGTTTCCATCTTCCATGAGAGGTTTGATCCTATAGTTGATTCTAGTTCTGGCCGTGATTTTATTCCAACCATGCTATTTGGAAGGAACATCCGCGGTCAAGATTTTGGTGGAATGTACTGCGCGGTGCTTACTGTCAACCAAGTTGTTGTGTCTGCTGGCATATTTCGTGTCTTTGGGCTAGAAGTAGCAGAGCTTCCACTAGTGGCAACAGTTGCAGATTTCCAAGGAAAGGGTTACTTCCAGTGCCTGTTTTCTTGCATGGAGAGGCTGCTTGCATCTCTGAATGTTAGACACCTTGTTTTGCCCGCAGCTGAAGAAGCCGAATCAATATGGACAAGTAAATTTGGGTTTACGAAACTAGAACAAGAGGAGATAAACAACTATAAGACATTTTATCGCATGATGATCTTTCAAGGGACTTCATTACTACGAAAGCCGGTTCCTATGCCTGAACAGAACTAG 2445 0.4339 MRNPSMKKSLVWLWMKXXXXKVSFEEQCADGVTTPVLVLGDDVKGKRVVAVEKPMRRFTRSALKQKAEETSMVNDGEGGAIVVAAAGDNVQNETEVVAETDASPVSTTPTLAKGSRRGMKRFPTKLKDLLATGIIEGLQVKYVRGKARRPGEAGLQGVIRDLGVLCYCPDCKGDEVVSPTVFELHAGSANKRPPEYMYLENGNTLRDVMNACWNFPLDTMEEAVQKVLGDFTLKKSNICFSCRGGDGLSRLLLCDSCMQLKDSQTSPHQTKSVAQITLTSNRSVAQTPLTSAKSVSQTAVIDTKTVSKTAVIDTKTDSQTTMTIAKSVSPAVQPRSPELQSESALVAVPKSLNNGMKHSTSHGRSQGKITRKDLRLHKLVFEEDVLADGTELTYYSHGEKKLVGYKKGYGIFCTCCKSEVSASQFEAHAGLASRRKPYLHIYTPDGVSLHDLSISLSKDRRFAISENDDLCSICEDGGDLLCCDGCPRAFHIDCVPLPCIPSGTWYCKYCQNLYGEHNANAQAKDRRCVRVVKTNKVDHGGCALCRKHYFSKCFSPRTVIICDQCEKEYHVGCLKENNIQNLEELPEGNWFCDTSCNQIHSALVNLVANGENSLPDSLLSLIKRKHEEKGLDAGDGLDIKWRLLNWKLASSVDTRKLLSKAVSIFHERFDPIVDSSSGRDFIPTMLFGRNIRGQDFGGMYCAVLTVNQVVVSAGIFRVFGLEVAELPLVATVADFQGKGYFQCLFSCMERLLASLNVRHLVLPAAEEAESIWTSKFGFTKLEQEEINNYKTFYRMMIFQGTSLLRKPVPMPEQN 814
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc70g00003 814 PANTHER AUTOIMMUNE REGULATOR 48 808 - -
Stsc70g00003 814 ProSitePatterns Zinc finger PHD-type signature. 471 510 IPR019786 -
Stsc70g00003 814 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 464 536 IPR013083 -
Stsc70g00003 814 SMART PHD_3 541 596 IPR001965 -
Stsc70g00003 814 SMART PHD_3 470 511 IPR001965 -
Stsc70g00003 814 CDD PHD1_AIRE 470 510 - -
Stsc70g00003 814 SUPERFAMILY FYVE/PHD zinc finger 539 594 IPR011011 -
Stsc70g00003 814 FunFam PHD finger family protein 638 807 - -
Stsc70g00003 814 ProSiteProfiles Zinc finger PHD-type profile. 468 513 IPR019787 -
Stsc70g00003 814 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 694 787 IPR016181 -
Stsc70g00003 814 Gene3D - 639 806 - -
Stsc70g00003 814 Pfam Tify domain binding domain 157 212 IPR032308 -
Stsc70g00003 814 Pfam Tify domain binding domain 404 452 IPR032308 -
Stsc70g00003 814 Pfam PHD-finger 471 512 IPR019787 -
Stsc70g00003 814 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 537 599 IPR013083 -
Stsc70g00003 814 SUPERFAMILY FYVE/PHD zinc finger 464 513 IPR011011 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc70g00003 Stsc-Chr70 21814 28648 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc70g00003 123 808 PHD Transcription Factor Family AT2G36720 44.537 0.0 596
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Stsc70g00003 TDBD 1.8e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc70g00003 - - lang:109350941 1015.37