Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc70g00002 ATGGCTATTGCTGGTGTGCATAGTGTGGCTGTGATTGACTCTACACTTCTTAGGGAGTCTCATTCTCAGTTATCAGGTAGGAGAGGGGATGGAGGAGGAGGGAGGGGAGGTGCCCGGTCGTCTTCTCTCTTGCAAATGTGGCGAGAAATCGAGGATGAACACATGGCGGGTCAAGTTCAAGGGAGGTCCGGGGAGTTGTTAATTTCGCAGCGGAGTGATGGATTGATCTCGGACCTGTCGCAGGAAGATGCACCACAGAGAGTAGAAGGTGAAAGGCATGTGATAGAAGATTCTTCAATTTTGGGTGAGAATGAATCAGAAACATGGTCACAGTCACAAAGTCAGAATGATTCTCATGATGATGAGGGTTTAGGCAATTCTAATTGTGAGAGCTCTTCAGATCTTGGAGAAGTTGAAAGGGAAAGAGTCAGGCAAATTTTCAGGGAATGGATGAGTAGCGGCGCTGGGGATCATCGCGCAACGAATGTTCCCAGAGGAAGTGGTGGTTCAAGGGGACAGTGGCTTGGGGAAACTGAGCAGGAGAGGGTGAGTATCATTAGGGAGTGGGTACAGATGAGTAGCCAGCAGAGAGTTGTGTCTTCTAGTGAAAATAGGGAAGACCAATCTTCTGAGATTTGTAACCAAATTGAACTTGTTCGTGATGGATTTGTTGTTAATCAGCATGAGGGCCAATCTGAGCATACACGGAGGGGAATCCGTAGATTGCGTGGCCGGCAGGTTCTGCTTGATATGCTCAAGAAGGCTGAGATGGAAAGGCAAAGAGAAGTTCAGGAGTTGTTTGAACACCGGGCTGTATCCCGTTTCCCCCATCGCAATCGCATTCAGGCATTGCTTAGAGGCAGGTTCTTGAGAAATGATAGATCAACTGATAATAACAGGTCCACTTCCATTGCGGAAAGTGAATTAGGTTTATTGAGGCAAAAACAGACTGTATCAGGTCTAAGGGAAGGATTCTTTTCCAGAAAGGAAAATTCTGGTTGCAGTCAAGCGACAAGCAACCTTTCCGATACCTCATCTGACGGTGATGATGATGTTAACGCAATTGAACATACCGGAGCCAGCAGTTCACAAATAGTCCCATCTGTACATGCTAGAAACTCAGAGTCTAATAACAATGGAAGTGATGGAATTGGCATGTCTGTCAGTGAAAACTGTTTTCAAGAATCTACTTATGAGAATCCAGACCATCAAGATTCTGCTACTTATGCTAACGAAATTGATCGTGCATTGGCATCAAGTGTTGAGGTTGAAGGCATTGGTAGCATTGGACAAAATGTTGTTATGGTTACTGAAGATGCCTCTAGTGGCCTTACCCAACAAAGCTTGCAAATCGAAGGTAGAGAGCCTAGCAATATGCAGGTAAATGAGGTACATATTGAGCAATCTGAGCTGGGTGGTATAACTGATAATGAAAGCTACTTATCACATCACAGCAATCATATAGAGGGCAATATTGCTGCTGATGTAGATTGGGATGAATCTGTTGCTCCAGAATTAGATCAACCAGAAGAGGCTATTTCTGAGAATGAAGGAGGTGAATGGCATCAAACCAGCATTGAATGGAGTAGCACTGAGGACGGTATTGACAATAATCAACTCGGTGGCTCATCAAATGAACTGCCTCAAAACACATTGGGAAATGAAGACGGAGAAAATCCTCGTCTACAAGAAGGCCCTGAAGTGTGGCAAGAGGACAGCGGCTTTCAAGAGGCTGTAGAAATTTGGTTGGGAGGACCTTCTGATCATGAAGCAGTTCCAGTTGGTAGAATTCATGGATTTTATTTTCCAGAAGATGACAATGTGTACAGTGTCGAACTCAGGGAACTGCTAAATAGGAGAAGTGTCTCAAACCTCCTTCGCAGCAGCTTTCGTGAGAGCCTTGATCAGTTGATACAATCATATGTTGAAAGGCAGAGTCATGCTAACATTGAGTGGGAGCTGCAAGAAACAACAACCCCTTCCTCTCCCTCAGCAGAACAGGGCCTTGAGCAGCAGAACAGGGATCCAATTGTTGATGCTCAGAATGCTGTTAATAGCTCACTTGGTAGTCAACCCTTGCCGCCGCCACCTCCACCACCGCCTATATGGGATCGCCGCCCACCGCCGCCTATATGGGATCGTCGCTCACGTCATGACAGATGGTCACATCATGATATAAATAATCAACGCCTAGGAATGGAATGGGATGTCATTAATGACTTGAGAGTTGACATGGTTAGGCTACAGCAAAGAATGAACAATATGCAGAGAATGCTGGAGACCTGCATGGATATGCAGCTTGAGTTGCAACGCTCAATAAGACAAGAGGTTTCTGCGGCCCTAAATCGCTCAACTGGTTCATCAGGAACACGTGACCATGATTCACCAGATGATAAATCCAGATGGGAATGCGTGAGGAAAGGGCTTTGCTGCATTTGCTGCGAAAGCAACATTGATTCTCTCTTGTACAGATGTGGGCACATGTGCACATGTTCTAAATGTGCTAATGATTTGCACCGAAGTGGAATGAAGTGTCCAATGTGTCAAGCACCAGTTGTGGAAGTAATTCGTGCTTATTCCATACTATAG 2589 0.4546 MAIAGVHSVAVIDSTLLRESHSQLSGRRGDGGGGRGGARSSSLLQMWREIEDEHMAGQVQGRSGELLISQRSDGLISDLSQEDAPQRVEGERHVIEDSSILGENESETWSQSQSQNDSHDDEGLGNSNCESSSDLGEVERERVRQIFREWMSSGAGDHRATNVPRGSGGSRGQWLGETEQERVSIIREWVQMSSQQRVVSSSENREDQSSEICNQIELVRDGFVVNQHEGQSEHTRRGIRRLRGRQVLLDMLKKAEMERQREVQELFEHRAVSRFPHRNRIQALLRGRFLRNDRSTDNNRSTSIAESELGLLRQKQTVSGLREGFFSRKENSGCSQATSNLSDTSSDGDDDVNAIEHTGASSSQIVPSVHARNSESNNNGSDGIGMSVSENCFQESTYENPDHQDSATYANEIDRALASSVEVEGIGSIGQNVVMVTEDASSGLTQQSLQIEGREPSNMQVNEVHIEQSELGGITDNESYLSHHSNHIEGNIAADVDWDESVAPELDQPEEAISENEGGEWHQTSIEWSSTEDGIDNNQLGGSSNELPQNTLGNEDGENPRLQEGPEVWQEDSGFQEAVEIWLGGPSDHEAVPVGRIHGFYFPEDDNVYSVELRELLNRRSVSNLLRSSFRESLDQLIQSYVERQSHANIEWELQETTTPSSPSAEQGLEQQNRDPIVDAQNAVNSSLGSQPLPPPPPPPPIWDRRPPPPIWDRRSRHDRWSHHDINNQRLGMEWDVINDLRVDMVRLQQRMNNMQRMLETCMDMQLELQRSIRQEVSAALNRSTGSSGTRDHDSPDDKSRWECVRKGLCCICCESNIDSLLYRCGHMCTCSKCANDLHRSGMKCPMCQAPVVEVIRAYSIL 862
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc70g00002 862 MobiDBLite consensus disorder prediction 690 707 - -
Stsc70g00002 862 MobiDBLite consensus disorder prediction 330 348 - -
Stsc70g00002 862 MobiDBLite consensus disorder prediction 685 716 - -
Stsc70g00002 862 Pfam Zinc finger, C3HC4 type (RING finger) 807 854 - -
Stsc70g00002 862 MobiDBLite consensus disorder prediction 20 40 - -
Stsc70g00002 862 MobiDBLite consensus disorder prediction 778 799 - -
Stsc70g00002 862 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 787 860 IPR013083 -
Stsc70g00002 862 SUPERFAMILY RING/U-box 809 855 - -
Stsc70g00002 862 MobiDBLite consensus disorder prediction 79 138 - -
Stsc70g00002 862 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 457 862 - -
Stsc70g00002 862 MobiDBLite consensus disorder prediction 531 557 - -
Stsc70g00002 862 Coils Coil 738 765 - -
Stsc70g00002 862 MobiDBLite consensus disorder prediction 101 133 - -
Stsc70g00002 862 CDD mRING-HC-C3HC5_NEU1 810 859 - -
Stsc70g00002 862 MobiDBLite consensus disorder prediction 152 173 - -
Stsc70g00002 862 MobiDBLite consensus disorder prediction 531 565 - -
Stsc70g00002 862 ProSiteProfiles Zinc finger RING-type profile. 810 849 IPR001841 -
Stsc70g00002 862 MobiDBLite consensus disorder prediction 84 100 - -
Stsc70g00002 862 MobiDBLite consensus disorder prediction 330 388 - -
Stsc70g00002 862 MobiDBLite consensus disorder prediction 356 388 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc70g00002 Stsc-Chr70 4733 11507 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc70g00002 810 856 C3H Transcription Factor Family AT3G06140 38.298 5.07e-06 47.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc70g00002 - - gmx:100801329 1070.46