Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc709g00002 ATGAAGAAATCACCTTCTACAGGCAGCACCAACAGAAGTTTTCTTCATGAAAATAGCCAAAAAAGAAAACAGAATAATGATCATTCTTTCTTGACATCTTTCAAGTCTGCTTTCAGAGCTGTTTTTGCATTGTTCCTCTCCGGAAGCAAAAGAAAAACACCCTCAAAGGTTGATGATAGAAACAACATATCAAAAGTCAGAGGAGTATCATCTTCAATTGACTCATCAAAGAGTTCATCAAAATGGAAATTTTCTAGTTCCTATGCATCATCATCTAGAACTGCAAGTGGACAACTTGAAGTTGGAAACTTCACCTTTGAAGAAATCTACAAGTCAACATCAAGATTCTCCCCAGAGAATCAGATTGGGGAAGGGGGATTCGGAACGGTTTACAAAGGCAAGCTTAACGATGGAACTCTTGTCGCAGTGAAACGAGCCAAGAAGGACGGGCCGAAACACTTGTACGAGTTCAAGAATGAAATATACACCTTGTCAAAGATTGAGCATCTGAATCTTGTGAGGTTATATGGATATTTGGAGCATGGTGAAGAGAAGATTATTGTTGTTGAGTATGTTGGTAATGGGACCCTTCGGGATCATCTAGATGGTACTCAAGGTGATGGACTAGAAATTGGTGAGCGTCTAGATGTAGCAATTGATGTAGCTCACGCAATCACTTACCTTCACATGTACACAGATAATCCAATTATTCATAGAGACATCAAAGCATCAAACATTCTAATAACAGAGAACTTAAGGGCCAAAGTGGCAGACTTTGGTTTTGCACGCTTGTCTGAGGACCCTTCAGCAACTCATATTTCAACTCAAGTTAAAGGAACTGCTGGCTACATGGATCCTGAGTACCTCAGAACATACCAACTCACTGATAAGAGTGACGTTTATTCCTTCGGCGTTTTGCTCGTCGAAATGATGACCGGACGGCATCCCATCGAGCCCAAGAGACCCCTCGAAGAGAGAGTCACAATCAGATGGGCAATGAAGATGCTAAAACAAGGGGATGTTGTGTTAGCAATGGACCCCAGAATGCGAAGAAGCCCGGCCTCTAACAAGGCAGTGAAGAAGGTTCTAAAACTAGCCTTCCAATGCCTTGCGCCTTCACGACAGTTGCGGCCATTTATGAAGAGTTGTGCAGAGGTTCTATGGGGAATCAGAAAAGACTTCAGAGATGAAGCCACTTCTAATGTTCCTCCTCTTCCTTCTCACCAATCTGAAAATTTTCCTCAAAGAGGAAAGAATATGCATATGGTGTTTGGTATTGAAGATGATGTGAGCAATAAATTTGCTTCTGCACCCAACCAAATTCATTCATAA 1332 0.4159 MKKSPSTGSTNRSFLHENSQKRKQNNDHSFLTSFKSAFRAVFALFLSGSKRKTPSKVDDRNNISKVRGVSSSIDSSKSSSKWKFSSSYASSSRTASGQLEVGNFTFEEIYKSTSRFSPENQIGEGGFGTVYKGKLNDGTLVAVKRAKKDGPKHLYEFKNEIYTLSKIEHLNLVRLYGYLEHGEEKIIVVEYVGNGTLRDHLDGTQGDGLEIGERLDVAIDVAHAITYLHMYTDNPIIHRDIKASNILITENLRAKVADFGFARLSEDPSATHISTQVKGTAGYMDPEYLRTYQLTDKSDVYSFGVLLVEMMTGRHPIEPKRPLEERVTIRWAMKMLKQGDVVLAMDPRMRRSPASNKAVKKVLKLAFQCLAPSRQLRPFMKSCAEVLWGIRKDFRDEATSNVPPLPSHQSENFPQRGKNMHMVFGIEDDVSNKFASAPNQIHS 443
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc709g00002 443 MobiDBLite consensus disorder prediction 1 15 - -
Stsc709g00002 443 SMART serkin_6 116 387 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc709g00002 443 ProSitePatterns Protein kinases ATP-binding region signature. 122 148 IPR017441 GO:0005524
Stsc709g00002 443 CDD STKc_IRAK 122 387 - -
Stsc709g00002 443 Pfam Protein tyrosine and serine/threonine kinase 119 386 IPR001245 GO:0004672|GO:0006468
Stsc709g00002 443 PANTHER LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 1.4 41 403 IPR044652 GO:0004672
Stsc709g00002 443 FunFam Calmodulin-binding receptor-like cytoplasmic kinase 3 192 401 - -
Stsc709g00002 443 MobiDBLite consensus disorder prediction 1 26 - -
Stsc709g00002 443 SUPERFAMILY Protein kinase-like (PK-like) 93 390 IPR011009 -
Stsc709g00002 443 FunFam Calmodulin-binding receptor-like cytoplasmic kinase 1 79 191 - -
Stsc709g00002 443 Gene3D Phosphorylase Kinase; domain 1 75 191 - -
Stsc709g00002 443 ProSiteProfiles Protein kinase domain profile. 116 389 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc709g00002 443 Gene3D Transferase(Phosphotransferase) domain 1 192 403 - -
Stsc709g00002 443 ProSitePatterns Serine/Threonine protein kinases active-site signature. 236 248 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc709g00002 Stsc-Chr709 11680 15403 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc709g00002 72 415 Receptor kinase-like Gene Family AT3G46290 38.873 9.10e-72 240
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-IV Stsc709g00002 PK_Tyr_Ser-Thr 3.6e-52 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc709g00002 - - lja:Lj2g3v2222900.1 618.616