Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc706g00003 ATGAAAACCCCTCCTTCTATGGCTTTGAAAGAAAAGAAGAAGACCACCACCGCCACGAAGAACAACATCAATGGCGTAGCCGTTAACAACGATAACAAAAAAGAGCTTCATTACCGGGGCGTCCGTAAGAGGCCATGGGGCCGTTACGCCGCCGAGATCAGGGATCCGGGGAAGAAGAGCCGCGTCTGGCTCGGAACATTCGACACCGCCGAAGAAGCTGCCATGGCTTACGACGCCGCCGCAAGACAGTTCCGCGGCTCCAAAGCCAAGACGAACTTCCCACTCGCTTCTTCTCCCAACGAAAACGCCAACCTCAACATCAACAAGAATAATAATAATAATAGCGCCGGCGACAGTCCTAGCCAGAGCAGCACTGTTGAGTCATCGACGCCGGAGCGTGAGGTCACGCGTCGCCGCGACGTTACGGTGATGGAGCGGTTTCCGTTCCTTCCGTTGCAGCAGCCGCTTCCGCCGCCGCACCATCAGCTCGTGCCGTTTGGAGTTGCCGGCGGTGCGGTTGTTGATGGCGTTGTGGCTCCTGTACGGCCAGTTTTCTTTTTAGATCCCACCGTCGGTCGGGCTGAGTTCTTTGGACAAAGCTTTCCCGTCCGGTTCGAGCCGGGTCCGTACGAGATTCGTACCGGGTTTGGAAGTTCGGCTCAGAGTGACTCGGACTCCTCCTCCGTCGTTGATTGCCAGCCCAAGACGGAGCTCAATCTGGATCTAAACCTAGCTCCGCCAATGGATGCTTAA 753 0.5631 MKTPPSMALKEKKKTTTATKNNINGVAVNNDNKKELHYRGVRKRPWGRYAAEIRDPGKKSRVWLGTFDTAEEAAMAYDAAARQFRGSKAKTNFPLASSPNENANLNINKNNNNNSAGDSPSQSSTVESSTPEREVTRRRDVTVMERFPFLPLQQPLPPPHHQLVPFGVAGGAVVDGVVAPVRPVFFLDPTVGRAEFFGQSFPVRFEPGPYEIRTGFGSSAQSDSDSSSVVDCQPKTELNLDLNLAPPMDA 250
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc706g00003 250 CDD AP2 37 94 IPR001471 GO:0003700|GO:0006355
Stsc706g00003 250 SUPERFAMILY DNA-binding domain 37 95 IPR016177 GO:0003677
Stsc706g00003 250 PRINTS Ethylene responsive element binding protein signature 38 49 IPR001471 GO:0003700|GO:0006355
Stsc706g00003 250 PRINTS Ethylene responsive element binding protein signature 60 76 IPR001471 GO:0003700|GO:0006355
Stsc706g00003 250 Gene3D AP2/ERF domain 37 96 IPR036955 GO:0003700|GO:0006355
Stsc706g00003 250 SMART rav1_2 37 100 IPR001471 GO:0003700|GO:0006355
Stsc706g00003 250 MobiDBLite consensus disorder prediction 91 130 - -
Stsc706g00003 250 Coils Coil 250 250 - -
Stsc706g00003 250 MobiDBLite consensus disorder prediction 91 140 - -
Stsc706g00003 250 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 21 189 - -
Stsc706g00003 250 ProSiteProfiles AP2/ERF domain profile. 37 94 IPR001471 GO:0003700|GO:0006355
Stsc706g00003 250 FunFam Ethylene-responsive transcription factor 2 37 95 - -
Stsc706g00003 250 Pfam AP2 domain 37 86 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc706g00003 Stsc-Chr706 24644 25938 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc706g00003 33 248 AP2-EREBP Transcription Factor Family AT5G44210 47.489 1.09e-49 160
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Stsc706g00003 AP2 2.1e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc706g00003 K09286 - gmx:100801924 197.208