Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc703g00003 ATGACGGAAAAGGGACACCACCGTATTATTCCTGTGTTTTACAAGATCGAACCAACACATGTTCGGAATCAGACCGGAAGCTACAACCATGTATTTGCGGATTATGAGAGAAACTTGAATGATCGTCTTGTGCTCCAGTGGAGGAAGGCACTCTTTCATGCAGCCAATATCTCGGGCTTCGAATATAACCATGACCATAGCAGGACTGAATCTGATTTCATTGAAGGCATAGTCCAAATGATTATCCGAAAATTGGATCACCAATATACAAATGAACTTAGGAGCCCTTTTATACATGACCAAAATTATGCATGCATTGAATCAATGTTGATCAACTCAAAGGAAGTTCGGACCATTGGAATCTGGGGCATGGGCGGGATAGGAAAGACAACTATTGCGGCTGCCATTTTTCGAGAGTTCTCTCCCCAGTACGAAGGTAGTTGTTTCTTGGCTAATGTAAGAGAAGAATCCTCAAGGCATGGACTGAACTACATATTCAACAGACTTCTTTGTGAGTTGCTGCAGGAAAATGTTCATATTAGCACTCCAAAGATAGTGTCTTCTGCTATAATCCGCAGATTGAGGCGCAAGAAAGTTTTCATTGTACTTGATGATGTGAATACTTCTGAACTTCTAGAAAATTTGCTTGGAGTGGGACAAGATTATCTTGGAGTTGGTAGCAAAGTTATTGTTACAACTCGAGATAAACATGTTCTTCTGAGCAGATCAGTGGATCACATCCATGAAGTCACAGAAATGAATGAAGAGAACTCTCTCAAACTTTTTAGTTTGAATGCCTTCAACACAATGAATCCACATAAAGATGGGTACTGGGATCTAGCAAAAAGGGCACTTGCTTATGGCAAAGGAAATCCTTTAGCATTGAAAGTCTTGGGATCATTTCTTAATTCCAAAAGTGAAAAGGAATGGGACAATGCATTGAAAAAACTAAGAAGGATTCCTAATGCAGATATTCATAAGGTGTTGAGGTTGAGTTTCAATGAATTAGATGACGCAGAAAAGGATATATTTTTAGATATTGCATGCTTTTTCAAAGGAGAAGAGAGAGAAAAAGTAGCTAGGATATTAAATGAGTGTGGCTTCTACGCAGATATTGGAATAAGAAATCTCTTAGACAAGGCTCTTATATCAATATCTACGAATAAAAGCATACAAATGCATGACTTGATACAGGAAATGGGTCATAAAATTGTGTGTGAAGAATCTCTCAAGAACCCTAGAAAGCGAAGCAGAGTGTGGCATCCAGATGAAGGGTCTGCTACAATTGAAACCTTATATCTGGATATGACTCAGGGTACAGAAATATGTATAAACTCTGATGCATTTAGAAAGATGCCAAAACTAAGGTTACTTGCTTTTGCTAGTAGTGGCATTGGTTATGGGATAAAGAGAGTTGATTATACTTTGAGTCTTCCAACAAATCTGGAATTGCCTAATAACTTGAGATATATTCAATGGGATGGATGCCCATTAAAATCTCTATCAACCACTTCTTGGCCTAGCAAGCTTGTTGAACTCTCCATGCCATACAGTAATGTTGAAAAGCTCTGGGATGGGAGACAGAACTTGCCCAGTTTGGAGGAAATTTATCTTTATGGTTCAAGACAATTGATAGAGTGTCCAGATTTTTCAGGTGCCCCAAATCTAAAATCAATATGGCTGAATCAATGTGAAAGCTTGACTCAAGTTCATCCTTCTGTTTTCTCCCTTCCAAAACTTGACTTTTTAGCTGTGTATGGAT 1762 0.3859 MTEKGHHRIIPVFYKIEPTHVRNQTGSYNHVFADYERNLNDRLVLQWRKALFHAANISGFEYNHDHSRTESDFIEGIVQMIIRKLDHQYTNELRSPFIHDQNYACIESMLINSKEVRTIGIWGMGGIGKTTIAAAIFREFSPQYEGSCFLANVREESSRHGLNYIFNRLLCELLQENVHISTPKIVSSAIIRRLRRKKVFIVLDDVNTSELLENLLGVGQDYLGVGSKVIVTTRDKHVLLSRSVDHIHEVTEMNEENSLKLFSLNAFNTMNPHKDGYWDLAKRALAYGKGNPLALKVLGSFLNSKSEKEWDNALKKLRRIPNADIHKVLRLSFNELDDAEKDIFLDIACFFKGEEREKVARILNECGFYADIGIRNLLDKALISISTNKSIQMHDLIQEMGHKIVCEESLKNPRKRSRVWHPDEGSATIETLYLDMTQGTEICINSDAFRKMPKLRLLAFASSGIGYGIKRVDYTLSLPTNLELPNNLRYIQWDGCPLKSLSTTSWPSKLVELSMPYSNVEKLWDGRQNLPSLEEIYLYGSRQLIECPDFSGAPNLKSIWLNQCESLTQVHPSVFSLPKLDFLAVYG 587
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc703g00003 587 Pfam TIR domain 5 91 IPR000157 GO:0007165
Stsc703g00003 587 ProSiteProfiles TIR domain profile. 1 85 IPR000157 GO:0007165
Stsc703g00003 587 PRINTS Disease resistance protein signature 288 302 - -
Stsc703g00003 587 PRINTS Disease resistance protein signature 118 133 - -
Stsc703g00003 587 PRINTS Disease resistance protein signature 528 544 - -
Stsc703g00003 587 PRINTS Disease resistance protein signature 193 207 - -
Stsc703g00003 587 Gene3D - 252 337 IPR042197 -
Stsc703g00003 587 Gene3D - 83 248 IPR027417 -
Stsc703g00003 587 Gene3D Ribonuclease Inhibitor 426 587 IPR032675 -
Stsc703g00003 587 Pfam Leucine Rich Repeat 509 528 IPR011713 -
Stsc703g00003 587 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 7 584 IPR044974 GO:0006952
Stsc703g00003 587 SMART AAA_5 115 252 IPR003593 GO:0016887
Stsc703g00003 587 SUPERFAMILY L domain-like 393 585 - -
Stsc703g00003 587 SUPERFAMILY Toll/Interleukin receptor TIR domain 3 60 IPR035897 -
Stsc703g00003 587 Gene3D - 1 82 IPR035897 -
Stsc703g00003 587 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 100 347 IPR027417 -
Stsc703g00003 587 Pfam NB-ARC domain 106 331 IPR002182 GO:0043531
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc703g00003 Stsc-Chr703 18928 22901 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc703g00003 9 587 WRKY Transcription Factor Family AT4G12020 32.053 6.54e-80 273