Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc700g00002 ATGGCAGTGGTAATCGTAGGTGCTGGAACTTCAGGTTTAGCTGTTGCAGCATGCTTAACACAAAAATCAGTACCATTCATCCTCCTCGAAAGAGAAGATTGTTTTGCTTCCTTATGGCAAAAATACACCTATGACCGTCTCCACCTTCACCTTGGAAAAAACGTGTGCGACCTTCCCCATCTTCCGTTACCTCATTCCTATCCCCGCTATGTTCCTAAGGAGCTCTTCATAGAGTATTTACACACCTACGTGAAGCATTTCAACATCAAGCCTTTGTACCATAGATCCGTGGAGCTTGCGGAGTTCGATGAGGTGGATCGGAAGTGGAAGGTGAAGGCTAAGAATACAGCCTCCGGCGAGGTTGAGGAGTATTCTGGAAGGTTCTTGGTGGTGGCTAGCGGGGAGACCGCGGAGCCACGTGTCCCTAAGGTTGAAGGTTTGGAGAGTTTCAAAGGGAAAGTGATGCATTCCACAGGTTACAAGAATGGTAAGGAGTTCAATGCTGATGAGCATGTTCTTGTTGTTGGATCTGGTAATTCTGGGATGGAGATCGCTCTAGATTTGTCCAATTTCGGTGCCAAACCTTCCATTATTGTTCGAAGCCCGGTTCATATTGTATCAAGGGATATGATGTATTATTCAGAGATGTTGTTGAAGTATCTATCGTTTAGCACGGTGGAGAAGCTACTTGTTATGGTGAGTAGGATTGTGTATGGGGATCTGAGCAAGTATGGGTTACCTTGGCCAACTGAGGGACCTTTCACCATGAAAATCAAGTATGGCAAGTTCAGTATCATTGACTTGGGAACTGTCAATAAAATCAGGAACGGAGAGATACAGGTGTTATCAGCAGAAATAGATAAAATAAGAGGTAATGAAGTGTTGTTTAGGGATGGCAAGTGTCACTCATTTGATTCAATCATATTCTGCACTGGCTTCAATAGATCAACACAAAAGTGGCTTAAGGGGGGTGATGATCTTCTGAATGAGGATGGTTTTGCCAAGGCAAGTAATTTTCCAAATCACTGGAAGGGTAAGAACAATTTGTATTGCGTTGGGCTTGCACAGAGAGGATTCGCTGGAGCTAAAAGTGAAGCTCAAAATGCTGGCGTTTATGATGAATACATTACCGTTGACAAGAAGTTCAAGAACTTGTTTATCTATGGTGATGGAAACACAAAAACCATCATCACTGGCCGCAAGAACTTCCATGAGGGTACTAAAACAATGAGAACCGCCACATTATCCTCCAATGCTGATGATTTCCTTGCCAAGTCAATTGCATTCGAGAACACCGCCGGTGCTGAAGGTCACCAAGCAGTGGCTCTCCGCATCCAAGGTGACCGCTCAGCCTTCTTTGATTGCGCCATGCGTGGTTACCAAGACACACTGTATGCCCATGCTCATCGTCAGTTCTACCGCAACTGTGAAATCTCCGGTACCATTGACTTCATCTTCGGCTATGGCACCACCTTGATCCAAAACTCTAGGATCATCGTGAGGAAGCCTATGTCAAACCAACAAAACATTGTTGTTGCTGACGGAACTGACCAGAAGAACATGCCTACCGGTATTGTCCTTCAAAATTGTGAGATCATGGCTGAACCCGCCCTCTACCCTGACAGGTTAACAGTGAGGACATTCTTGGCAAGACCATGGAAGGCATTCTCAAGGGCAGTGTTTATTGAGAACAACATTGGTGACTTGATCCAGCCACAAGGTTACATCCCATGGAACCCACCAACTGAGGCTAACACTGACCATTGTTACTTTGTTGAGTTTGGAAACACTGGTGCTGGTGCCAATGCCCAAGCCAGAGCCAAATTTGCAAAGGGACTAATTAGCAAGGATGAAGCTGCTAAATATCTTGCTGAGCCATGGATCCAAGCTAGCACTTGGGTCCCAGCTACTGGCATTTCTTATGATGCTGGCTTCATCAAGGCTTAA 1947 0.453 MAVVIVGAGTSGLAVAACLTQKSVPFILLEREDCFASLWQKYTYDRLHLHLGKNVCDLPHLPLPHSYPRYVPKELFIEYLHTYVKHFNIKPLYHRSVELAEFDEVDRKWKVKAKNTASGEVEEYSGRFLVVASGETAEPRVPKVEGLESFKGKVMHSTGYKNGKEFNADEHVLVVGSGNSGMEIALDLSNFGAKPSIIVRSPVHIVSRDMMYYSEMLLKYLSFSTVEKLLVMVSRIVYGDLSKYGLPWPTEGPFTMKIKYGKFSIIDLGTVNKIRNGEIQVLSAEIDKIRGNEVLFRDGKCHSFDSIIFCTGFNRSTQKWLKGGDDLLNEDGFAKASNFPNHWKGKNNLYCVGLAQRGFAGAKSEAQNAGVYDEYITVDKKFKNLFIYGDGNTKTIITGRKNFHEGTKTMRTATLSSNADDFLAKSIAFENTAGAEGHQAVALRIQGDRSAFFDCAMRGYQDTLYAHAHRQFYRNCEISGTIDFIFGYGTTLIQNSRIIVRKPMSNQQNIVVADGTDQKNMPTGIVLQNCEIMAEPALYPDRLTVRTFLARPWKAFSRAVFIENNIGDLIQPQGYIPWNPPTEANTDHCYFVEFGNTGAGANAQARAKFAKGLISKDEAAKYLAEPWIQASTWVPATGISYDAGFIKA 648
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc700g00002 648 Pfam Flavin-binding monooxygenase-like 3 315 IPR020946 GO:0004499|GO:0050660|GO:0050661
Stsc700g00002 648 FunFam Pectinesterase 4 366 645 - -
Stsc700g00002 648 SUPERFAMILY FAD/NAD(P)-binding domain 3 220 IPR036188 -
Stsc700g00002 648 ProSitePatterns Pectinesterase signature 2. 478 487 IPR033131 -
Stsc700g00002 648 Pfam Pectinesterase 369 630 IPR000070 GO:0030599|GO:0042545
Stsc700g00002 648 Gene3D - 1 369 IPR036188 -
Stsc700g00002 648 SUPERFAMILY FAD/NAD(P)-binding domain 169 353 IPR036188 -
Stsc700g00002 648 Gene3D - 370 645 IPR012334 -
Stsc700g00002 648 PANTHER FLAVIN-BINDING MONOOXYGENASE-LIKE PROTEIN (AFU_ORTHOLOGUE AFUA_4G09220) 3 429 - -
Stsc700g00002 648 SUPERFAMILY Pectin lyase-like 369 643 IPR011050 -
Stsc700g00002 648 PRINTS Flavin-containing monooxygenase (FMO) signature 1 14 IPR000960 GO:0050660|GO:0050661
Stsc700g00002 648 PRINTS Flavin-containing monooxygenase (FMO) signature 183 198 IPR000960 GO:0050660|GO:0050661
Stsc700g00002 648 PRINTS Flavin-containing monooxygenase (FMO) signature 155 169 IPR000960 GO:0050660|GO:0050661
Stsc700g00002 648 PRINTS Flavin-containing monooxygenase (FMO) signature 68 83 IPR000960 GO:0050660|GO:0050661
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc700g00002 Stsc-Chr700 10199 16227 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc700g00002 370 645 Carbohydrate Esterase AT5G49180 45.520 2.66e-80 263
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc700g00002 K11816 - gmx:100777958 570.852