Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc6g00027 ATGAAGAGGTCTAGGGACGATATTTTCGCGAGTCCTCAACTCAAACAGCCTATGGTGTCTTCTCGAGGAGAAGCTAATTGCATCTTCGACTTAGTAATGGAGCTTCTCGAGTTTTTACTGCGGTTTAAAGTTTTACTAGTGCCCCCGTGTGTTATCCGGTCGGGGCAACCCCAGATGATGAATGGAGGTGCTGGTGCTCAGAAGCTAACTACAAATGATGCATTGGCATATCTCAAGGCAGTAAAGGATATATTTCAGGATAAGAGGGACAAGTATGATGACTTTTTGGAAGTCATGAAAGATTTTAAGGCTCAAAGGGGTTATGAAATCACACTTCCACTGGAGGATGAACAACCTGCCCCAAAGAAGCCTGTTGAATTTGAAGAAGCGATTAATTTTGTGAACAAAATTAAGACCCGGTTTCAAGGCGATGATCGTGTTTACAAGTCATTTCTGGACATATTAAATATGTACAGAAAGGAAAGCAAGTCTATAACAGAGGTTTACGAGGAGGTTGCTGCACTTTTCCAAGACCATCCAGATCTTCTTGATGAGTTTACTCATTTTCTTCCAGACACTTCCGCAGCAGCCTCTACTCATTATATTTCTGCTCGAAATTCTATGCTACGTGATAGGAGCTCTCCAATGCCAACTATGCGGCAAATGCATGTTGAGAAGAGAGAAAGGACTATGGCCTCACATGGTGACCGTGACCTCAGTGTTGACCGTCCTGATCCTGATAATGACAGAGGTCTGATGAGGGCAGAAAAGGATAGGAGACGTCTAGAGAAGGATAAAGATCGCAGAGACGAGAGAGATAGGAGAGAACGTGACAGGGATGATAGAGATTATGAGCATGATGGTGGTAGAGATAGGGAAAGGTTCTCCAACAAACGGAAATCTGATCGTAGGGCTGAAGACTCTGGAGCCGAACCATTGCTTGATGCTGATGAAAATATTGGTATGCGCCCTATGTCATCCACTTGTGATGATAGAAATACTCTGAAAAGCATGTATAGCCAGGAGCTTGCTTTCTGTGAAAAGGTCAAAGAGAAATTACGAAATCCTGATGACTACCAAGAATTTTTGAAGTGCTTGCATATTTACAGCAGGGAAATAATTACTAGACATGAATTGCAGTCACTGGTTGGTGATTTACTGGGGAAATATCCAGATCTTATGGAGGGGTTTAATGAATTTTTGATACAATCTGAAAAGAATGAAGGTGGATTCCTTGCTGGTGTCATGAATAAAAAGTCCTTGTGGAGTGATGGACAGAGGCCAAAATCTGTGAAGGTTGAAGACAGGGATCGTGATCGAGACCGTTATAGGGATGATGGCATGAAAGAAAGGGATCGTGAATTTCGAGAAAGAGACAAATCCACTGCCCCTTCCAACAAGGATGTTTCAGGTTCTAAGATGTCCATATATCCCAGCAAGGATAAGTATTTGTCAAAGCCTATAAATGAGCTGGACCTTTCTAACTGTGACCAATGCACTCCAAGCTATCGTCTATTGCCCAAAAATTACCCAATACCTGTAGCTAGCCAGAGAACAGAACTTGGTGCTGAAGTATTAAATGATCACTGGGTGTCTGTGACCTCAGGAAGTGAGGATTATTCCTTTAAACATATGCGCAAAAATCAATATGAAGAAAGCTTATTCAGATGTGAAGATGACAGGTTTGAACTCGATATGTTGCTAGAGTCTGTAAATGCAACTACAAAGCGAGTGGAAGAGCTGTTAGAAAAGATCAATAATAATATAATCAAAGGAGACAGTCCAGTTCGTATTGAGGAGCACTTAACAGCCTTAAATCTTAGGTGTATTGAACGATTATATGGTGACCATGGGCTAGATGTGATGGATGTGTTAAAGAAAAATGCATCTCTGGCTTTGCCAGTGATATTAACGCGTTTGAAGCAGAAACAGGAAGAATGGGCAAGGTGTCGTGCTGATTTTAATAAAGTCTGGGCTGAAATATATGCCAAAAATTATCATAAATCTCTTGATCACCGTAGCTTCTACTTTAAACAACAGGATACAAAGAGCTTGAGTACTAAAGAAGTGGCAACAGAAGCAGAGAACTGTGAGGGAGTAGGAGTCCTATGTAGAGCAGCTGATGCATTTGGAGAGAGTGTATTTGAGTGA 2151 0.4156 MKRSRDDIFASPQLKQPMVSSRGEANCIFDLVMELLEFLLRFKVLLVPPCVIRSGQPQMMNGGAGAQKLTTNDALAYLKAVKDIFQDKRDKYDDFLEVMKDFKAQRGYEITLPLEDEQPAPKKPVEFEEAINFVNKIKTRFQGDDRVYKSFLDILNMYRKESKSITEVYEEVAALFQDHPDLLDEFTHFLPDTSAAASTHYISARNSMLRDRSSPMPTMRQMHVEKRERTMASHGDRDLSVDRPDPDNDRGLMRAEKDRRRLEKDKDRRDERDRRERDRDDRDYEHDGGRDRERFSNKRKSDRRAEDSGAEPLLDADENIGMRPMSSTCDDRNTLKSMYSQELAFCEKVKEKLRNPDDYQEFLKCLHIYSREIITRHELQSLVGDLLGKYPDLMEGFNEFLIQSEKNEGGFLAGVMNKKSLWSDGQRPKSVKVEDRDRDRDRYRDDGMKERDREFRERDKSTAPSNKDVSGSKMSIYPSKDKYLSKPINELDLSNCDQCTPSYRLLPKNYPIPVASQRTELGAEVLNDHWVSVTSGSEDYSFKHMRKNQYEESLFRCEDDRFELDMLLESVNATTKRVEELLEKINNNIIKGDSPVRIEEHLTALNLRCIERLYGDHGLDVMDVLKKNASLALPVILTRLKQKQEEWARCRADFNKVWAEIYAKNYHKSLDHRSFYFKQQDTKSLSTKEVATEAENCEGVGVLCRAADAFGESVFE 716
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc6g00027 716 MobiDBLite consensus disorder prediction 426 476 - -
Stsc6g00027 716 SUPERFAMILY PAH2 domain 66 105 IPR036600 GO:0006355
Stsc6g00027 716 SMART hdac_interact2seq4b 495 595 IPR013194 -
Stsc6g00027 716 Pfam Paired amphipathic helix repeat 147 190 IPR003822 GO:0006355
Stsc6g00027 716 Pfam Paired amphipathic helix repeat 357 401 IPR003822 GO:0006355
Stsc6g00027 716 Gene3D Paired amphipathic helix 122 194 IPR036600 GO:0006355
Stsc6g00027 716 SUPERFAMILY PAH2 domain 334 401 IPR036600 GO:0006355
Stsc6g00027 716 Gene3D Paired amphipathic helix 64 114 IPR036600 GO:0006355
Stsc6g00027 716 SUPERFAMILY PAH2 domain 121 192 IPR036600 GO:0006355
Stsc6g00027 716 MobiDBLite consensus disorder prediction 221 311 - -
Stsc6g00027 716 ProSiteProfiles PAH domain profile. 335 404 IPR003822 GO:0006355
Stsc6g00027 716 MobiDBLite consensus disorder prediction 428 464 - -
Stsc6g00027 716 FunFam Paired amphipathic helix protein SIN3 333 406 - -
Stsc6g00027 716 Coils Coil 252 272 - -
Stsc6g00027 716 FunFam Paired amphipathic helix SIN3-like protein 122 193 - -
Stsc6g00027 716 Coils Coil 564 588 - -
Stsc6g00027 716 ProSiteProfiles PAH domain profile. 123 193 IPR003822 GO:0006355
Stsc6g00027 716 Pfam Sin3 family co-repressor 498 588 IPR013194 -
Stsc6g00027 716 Gene3D Paired amphipathic helix 333 405 IPR036600 GO:0006355
Stsc6g00027 716 PANTHER SIN3B-RELATED 106 697 IPR039774 GO:0003714
Stsc6g00027 716 MobiDBLite consensus disorder prediction 206 315 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc6g00027 Stsc-Chr6 271643 278898 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc6g00027 45 105 WRKY Transcription Factor Family AT4G12020 45.902 7.76e-08 54.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Stsc6g00027 Sin3_corepress 1.1e-36 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc6g00027 K11644 - gmx:100817626 1095.49