Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc6g00016 ATGGCTCTGAAGAATGCTGTGATTCTTCTGAGCCTTCTTTTCCTTTCACACATTTTTCTCATACAAACATGTTATTCCCAAACCAATTTTGATTCTCAAAACATTGAAACTTTCTACCCAATTGAAACACCACAAGAACCACCATTACCAACAATAAATCCAGAAGAATCACCACCACCATCATCTCCATCACCATCATCATCATCAGTGGCAGTATCATCATCAAGAAATTCATCATCAAACAGCAAGGTAGCAAAGGCTGTAGCTGCAACTGCAGCAGGCACACTAACTGTTTGTGGAATTGTCTTCTTCATAGGTCTAATGTGCTTCAGAGCAAAGAAGAAACATGGCATAACCAACACTGCTACAACAACAACAACAACTTCTTCAACACATAGAGATCATAGGAATGTTGTGGTGCCTCTGCCTCAGCCTCAGCCTCAGCATCAGGTGAGTGTGTATGAGAGAATGGAAGGTAACATCAAAGGGCTAATTGTTGATGAGAATGGTTTGGATGTTGTATATTGGAAAAGTCTTCAAGATGGTGGTAACAACTCAAAAGAGGTATTGGGTAATACTCACAAGAACAAAGAAGAAAAAGATCATGATGGATATTATTATCAAAGGAAAAAATCTGAGTCTAATGTTCAGGAAATTCCTTTGATAAGAGGGTTATCTTCAACCTCTTCACATTTGAATATATTCCCTGTAGAACCATACACTATTATGAAGATTCCACCACCTGCTCCTCCTCCTCCCATTAATGGTGATCATAAACTAGATTTTGTTAGCCACTCAGAAGAAAAACCACCCTCCATTTCTTCATCCTCAACTCCTACACCACTTTCACCTTCCACTCCAAGAATCCAAGATAGAAAAAGTTCAGCACCTGCGCCGCCGCGGCCTCCTCTTCCACCAATTCCAAAGAGCCAAGCAGTGCCACCCCCACCTCCTGCACCAGTGCCACAACCACCACCACCTCCCCCTCCTCCACCAATTACTGTTAGAAAGAGTCAAGCCCCGCCACCGCCACCTCCACCAATTCCTTCCAGAAAGGGTCTACCACCAAAGGGAGGAAATTTGAAATCATCATCAAAACCACCACCTACCCCTATTGAAGCACCATCAAACTCAAAAAGAGGGAAATCTAAAGATGAAGTTATGCATGAAACCGGCAATGGTCAAGTGAAGCTGAAGCCTCTGCATTGGGATAAAGTCAGCACAAATATTGATCACTCCATGGTTTGGGACAAAATTGACCGTGGCTCCTTCAGGGTCGATGATGATCTTATGGAAGCTCTCTTTGGCTATGTTGCCGTTAACCGTGACGACCCGAAAGCAAATGATTCAAGGAGTTCAAGCAAGGGTTCCCCTACCTCAGCTCCATCAACAAATGCATATACCCTTCTTGACCCAAGAAAATCACAGAACACTGCCATTGTGTTGAAATCTCTTGCAATATCAAGAAAAGAAGTGATTGATGCACTCCTTGATGGTCATGGCCTCAATACAGACACCATTGAAAAGCTTTCTAGGGTTGCTCCAACAGAAGAAGAGCAATCTCTTATACTCCAATACGGAGGAGACCCTGCAAAGCTTCCTGCAGCCGAGTCTTTCCTGTATCACACCCTCAAAGCTGTTCCTTCGGCGTTTAAGCGCTTGAATGCCATGCTGTTCAGGCTGAATTATGATGTCGAGATTGTCGAAATCAAGGAGTTTCTGCAGACACTTGAGTTGGGATGTAAGGAGCTTCGGAACCAAGGAGTGTTCCTGAAGCTTCTTGAAGCAGTTCTTAAGGCTGGAAATCGCTTGAATGCAGGTACTCATAGGGGTAATGCTCAAGCTTTCAACTTGGCTTCCCTTAGAAAACTCTCTGATGTGAAAAGCACCGATGGAAAAACCACATTGCTTCACTTTGTGGTTGAGGAAGTGGTCCGATCAGAAGGCAAACGTGCTGCTCTCAACCGAAGCTACAGCATGAGCCGAAGTAGCAGCAGAAGTAGAAGTAGCAACAGTACTAGCAGTGAAAACACAGAGAATTTTGTCTCAGATGAACAAAGAAAAAGGGAATACATAACACTAGGATTGCCAATTGTTGGAGGGTGCGGAGGAAATGATAAAGGAGGGAATTTTGTTAGAGAAATGAACCGTTTTCTTGCAACTGCTGAGGAAGAAGTGAAACTGCTAAGTGAAGAGCATGGAAGGGTGATGCAACTTGTGAAGAAAACAACAGCTTATTATCAAGGAGGAGGGGCATGGAAAGAGAGTGAACAACCACTTCAACTGTTTGAGATAGTGAAGGATTTTCTGGGAATGGTAGATCAAGCATGCATTGAGATTGCTCGTAACATGCAGAAGAGGAAGGGTACAAAGGAGAAAGGACTTTTGTGGTTTTGA 2397 0.4339 MALKNAVILLSLLFLSHIFLIQTCYSQTNFDSQNIETFYPIETPQEPPLPTINPEESPPPSSPSPSSSSVAVSSSRNSSSNSKVAKAVAATAAGTLTVCGIVFFIGLMCFRAKKKHGITNTATTTTTTSSTHRDHRNVVVPLPQPQPQHQVSVYERMEGNIKGLIVDENGLDVVYWKSLQDGGNNSKEVLGNTHKNKEEKDHDGYYYQRKKSESNVQEIPLIRGLSSTSSHLNIFPVEPYTIMKIPPPAPPPPINGDHKLDFVSHSEEKPPSISSSSTPTPLSPSTPRIQDRKSSAPAPPRPPLPPIPKSQAVPPPPPAPVPQPPPPPPPPPITVRKSQAPPPPPPPIPSRKGLPPKGGNLKSSSKPPPTPIEAPSNSKRGKSKDEVMHETGNGQVKLKPLHWDKVSTNIDHSMVWDKIDRGSFRVDDDLMEALFGYVAVNRDDPKANDSRSSSKGSPTSAPSTNAYTLLDPRKSQNTAIVLKSLAISRKEVIDALLDGHGLNTDTIEKLSRVAPTEEEQSLILQYGGDPAKLPAAESFLYHTLKAVPSAFKRLNAMLFRLNYDVEIVEIKEFLQTLELGCKELRNQGVFLKLLEAVLKAGNRLNAGTHRGNAQAFNLASLRKLSDVKSTDGKTTLLHFVVEEVVRSEGKRAALNRSYSMSRSSSRSRSSNSTSSENTENFVSDEQRKREYITLGLPIVGGCGGNDKGGNFVREMNRFLATAEEEVKLLSEEHGRVMQLVKKTTAYYQGGGAWKESEQPLQLFEIVKDFLGMVDQACIEIARNMQKRKGTKEKGLLWF 798
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc6g00016 798 MobiDBLite consensus disorder prediction 246 400 - -
Stsc6g00016 798 Gene3D Formin, FH2 domain 410 795 IPR042201 -
Stsc6g00016 798 SMART it6_source 385 788 IPR015425 -
Stsc6g00016 798 ProSiteProfiles Formin homology-2 (FH2) domain profile. 388 798 IPR015425 -
Stsc6g00016 798 PANTHER FORMIN-RELATED 709 784 IPR027643 GO:0003779|GO:0030036|GO:0045010|GO:0051015
Stsc6g00016 798 MobiDBLite consensus disorder prediction 41 77 - -
Stsc6g00016 798 MobiDBLite consensus disorder prediction 656 680 - -
Stsc6g00016 798 Pfam Formin Homology 2 Domain 393 773 IPR015425 -
Stsc6g00016 798 Coils Coil 712 732 - -
Stsc6g00016 798 MobiDBLite consensus disorder prediction 43 65 - -
Stsc6g00016 798 MobiDBLite consensus disorder prediction 656 683 - -
Stsc6g00016 798 MobiDBLite consensus disorder prediction 443 468 - -
Stsc6g00016 798 SUPERFAMILY Formin homology 2 domain (FH2 domain) 401 790 - -
Stsc6g00016 798 MobiDBLite consensus disorder prediction 268 292 - -
Stsc6g00016 798 MobiDBLite consensus disorder prediction 378 392 - -
Stsc6g00016 798 MobiDBLite consensus disorder prediction 296 353 - -
Stsc6g00016 798 MobiDBLite consensus disorder prediction 451 468 - -
Stsc6g00016 798 FunFam Formin-like protein 395 785 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc6g00016 Stsc-Chr6 186753 189783 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc6g00016 335 788 FH2 protein (formin) Gene Family AT1G70140 50.407 2.22e-149 454
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc6g00016 - - gmx:100780368 714.916