Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc6g00013 ATGAACCGAGTGATGGAGAGAGACGGTGTCGTTTCCGAACAAGTTCATGTCTTAGCCGTCGATGACAGCCTCGTCGATCGGAAGGTCATTGAGCGTTTGCTCAAAATCTCAGCTTGTAAAGTTACAGTTGTTGATAGTGGAATCAGTGCCCTGCAGTTACTAGGGCTGGATGAACAGAGAACAACATCTGAATCAGATGATTTCGTGGGTTTAAAGGTAGATCTAATTATCACAGACTATTGCATGCCGGGAATGACTGGTTATGATTTGCTCAAAAAAATCAAGGGATCGTCCACTTTCAGAGAAATTCCGGTCGTCATCATGTCCTCGGAAAATATCTTGCCACGAATAGACAGATGCTTGGAGGAGGGAGCAAAGGATTTCATAGTGAAGCCAGTGAAGTTATCTGACGTGAAACGGTTGAAGAATTATATGAGCACCGCCACCAGGGAAGTTAGCGCTGCCGCCGGAGGTTTCGGTGGTGGTGGCGGCGGCGGAGGAGGGATTAACAAAAGGAAGCTTTCAGATACCAGTACAGTTGACGATATGTCATCATCTCCACCGTCCATTTCGCCCTCAATAACACCCTCATCATCATCATCGCCGTCCGATTCTTCATCGCCTTCGCCGTCCCCATTATCTTCGCCCATCAGGGCGCTTGATTCTCCAATCCGACGGCTTAAAATGAGCAGCGCAGATTGA 702 0.4786 MNRVMERDGVVSEQVHVLAVDDSLVDRKVIERLLKISACKVTVVDSGISALQLLGLDEQRTTSESDDFVGLKVDLIITDYCMPGMTGYDLLKKIKGSSTFREIPVVIMSSENILPRIDRCLEEGAKDFIVKPVKLSDVKRLKNYMSTATREVSAAAGGFGGGGGGGGGINKRKLSDTSTVDDMSSSPPSISPSITPSSSSSPSDSSSPSPSPLSSPIRALDSPIRRLKMSSAD 233
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc6g00013 233 CDD REC_typeA_ARR 17 141 - -
Stsc6g00013 233 Gene3D - 15 159 - -
Stsc6g00013 233 ProSiteProfiles Response regulatory domain profile. 16 146 IPR001789 GO:0000160
Stsc6g00013 233 PANTHER TWO-COMPONENT RESPONSE REGULATOR 15 169 IPR045279 GO:0009736
Stsc6g00013 233 Pfam Response regulator receiver domain 17 138 IPR001789 GO:0000160
Stsc6g00013 233 MobiDBLite consensus disorder prediction 155 233 - -
Stsc6g00013 233 SMART REC_2 15 145 IPR001789 GO:0000160
Stsc6g00013 233 SUPERFAMILY CheY-like 14 141 IPR011006 -
Stsc6g00013 233 MobiDBLite consensus disorder prediction 179 216 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc6g00013 Stsc-Chr6 158878 160651 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc6g00013 12 225 Response Regulator Gene Family AT1G59940 56.221 2.84e-70 216
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Stsc6g00013 Response_reg 1.4e-20 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc6g00013 K14492 - gmx:100779833 244.973