Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc695g00002 ATGGATTTGAGTGCTAACAGTAACACTAACAGTAGTAATGAAGAGAGTGAACTGTACCACGCACAAATCCACTTGTACAAGCATGTCTACAACTGGGTTAGTTCCATGGCTCTCAAAGCCATCATGGAGCTAGGCGTCGCTGACGTCATCCACAGCCATGGCAAGCCCCTCACCCTCTCTCAATTGGCCACTGAGCTCAAGCTCCACCCTTCCAAAGTCGGAGCCCTCCACCGCTTCCTCCGCCTCCTGACACACAACGGTTTCTTCGCCAAGACCAAGATTCAAGAACAAGAAGAAGAAGCTTACTCTCTCACCCCTCCTTCCAAGCTTCTCATCAGGAGCAAGCCAACGAATCTTTCATCCATAGTGAAGGGAGCACTCCATTGGAGCTCCCTTGACATGTGGCACTCTTCCGAGAAGTGGTTCACTGAGGACAAGGAACAAACCATGTATGAGACCTCTTCTGGAGGACAGAGCTTCTGGGATTTTCTCAACAAGGAGACTGATTGCATCAAGATGTTCCAGGATGCCATGGCTTCTGACTCTTACATGTTCAAGCTTGCCCTCAAGGAGTGCAGGCACGTGTTTGAGAATCTTGGCTCCATTGTTGATGTTGGTGGTGGTACTGGTGGTGTCTCTAAACTCATCCATCAAGAGTTTCCGCAGTTGAAGTGCACCGTTTTTGACCAGCCAGAGGTTGTTGCTAACCTCAAAGGTGATGATGGCAATTTGAACTTTGTTGGCGGCGACATGTTCAAATCTATCCCTTCTGCCGATGCAGTCTTACTCAAGTGGGTTCTACATGACTGGAATGATGAACTGGCCTTGAAGATATTGAAGAACAGCAAGGAAGCTATCTCAGGAAGAGGGAAAGAAGGGAAGGTGATAATCATAGACATATCGATCGATGACACGAGCGATGATAAAGAATTGACAGGGCTGAAACTGGATTATGATTTGGTGATGCTGACAATGTTCAATGGGAAGGAAAGAGAGAAGAAGGAATGGGACAAGCTCATCTATGAGGCAGGATTCAGCAGATACACCCTCACCCCAATTTGTGGCTTCAAGTCTCTTATTGAAGCTTACCCTTGA 1095 0.474 MDLSANSNTNSSNEESELYHAQIHLYKHVYNWVSSMALKAIMELGVADVIHSHGKPLTLSQLATELKLHPSKVGALHRFLRLLTHNGFFAKTKIQEQEEEAYSLTPPSKLLIRSKPTNLSSIVKGALHWSSLDMWHSSEKWFTEDKEQTMYETSSGGQSFWDFLNKETDCIKMFQDAMASDSYMFKLALKECRHVFENLGSIVDVGGGTGGVSKLIHQEFPQLKCTVFDQPEVVANLKGDDGNLNFVGGDMFKSIPSADAVLLKWVLHDWNDELALKILKNSKEAISGRGKEGKVIIIDISIDDTSDDKELTGLKLDYDLVMLTMFNGKEREKKEWDKLIYEAGFSRYTLTPICGFKSLIEAYP 364
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc695g00002 364 Pfam O-methyltransferase domain 135 346 IPR001077 GO:0008171
Stsc695g00002 364 FunFam Coniferyl alcohol 9-O-methyltransferase 8 111 - -
Stsc695g00002 364 PIRSF O-mtase 1 364 IPR016461 GO:0008168
Stsc695g00002 364 SUPERFAMILY "Winged helix" DNA-binding domain 15 115 IPR036390 -
Stsc695g00002 364 Pfam Dimerisation domain 36 84 IPR012967 GO:0046983
Stsc695g00002 364 PANTHER O-METHYLTRANSFERASE 20 347 IPR016461 GO:0008168
Stsc695g00002 364 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 26 364 IPR016461 GO:0008168
Stsc695g00002 364 Gene3D Vaccinia Virus protein VP39 113 364 IPR029063 -
Stsc695g00002 364 FunFam O-methyltransferase ZRP4 114 364 - -
Stsc695g00002 364 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 130 363 IPR029063 -
Stsc695g00002 364 Gene3D - 6 111 IPR036388 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc695g00002 Stsc-Chr695 16366 19029 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc695g00002 12 345 Monolignol Biosynthesis Gene Families AT5G54160 29.912 9.19e-39 140
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc695g00002 K22588 - gmx:100807589 541.576